DRSC/TRiP Functional Genomics Resources

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Protein Alignment GBP3 and gbp2

DIOPT Version :9

Sequence 1:NP_060754.2 Gene:GBP3 / 2635 HGNCID:4184 Length:595 Species:Homo sapiens
Sequence 2:XP_699217.2 Gene:gbp2 / 570622 ZFINID:ZDB-GENE-070912-618 Length:627 Species:Danio rerio


Alignment Length:592 Identity:270/592 - (45%)
Similarity:397/592 - (67%) Gaps:3/592 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     6 HMTGPMCLIENTN-GELVANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKNKGFSLGS 69
            ||:.|:|||||.. |:|....||..||..|.:|||||::|||||||||||||:||||..||:|||
Zfish     6 HMSAPVCLIENDEFGKLCVKKEAKDILDEINEPVVVVSVVGLYRTGKSYLMNRLAGKQSGFALGS 70

Human    70 TVKSHTKGIWMWCVPHPKKPEHTLVLLDTEGLGDVKKGDNQNDSWIFTLAVLLSSTLVYNSMGTI 134
            |::|.||||||||||||.|..||||||||||||||.|||.::|:|||.|||||||.|||||:|.|
Zfish    71 TIESKTKGIWMWCVPHPYKKGHTLVLLDTEGLGDVDKGDERHDTWIFCLAVLLSSALVYNSLGVI 135

Human   135 NQQAMDQLYYVTELTHRIRSKSSPDENENED-SADFVSFFPDFVWTLRDFSLDLEADGQPLTPDE 198
            :..|:::|:||||||..||.|:..:|.|:|| ||:|:..||.|||.:|||:|:|:...:|:|.||
Zfish   136 DNMALEKLHYVTELTENIRVKAEGNEVEDEDESAEFMRVFPSFVWAVRDFTLELKMGDKPITSDE 200

Human   199 YLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDLPIHRRKLAQLEKLQDEELDPEFVQQ 263
            |||.:||..:|.|.:...:||||.|:|:||..:|||||..|...:.:.::|.|.:||||.||:||
Zfish   201 YLESALKPKKGNSPQIAQYNLPRRCLREFFAPRKCFVFPRPASTQDMKRMEDLTEEELDSEFLQQ 265

Human   264 VADFCSYIFSNSKTKTLSGGIKVNGPRLESLVLTYINAISRGDLPCMENAVLALAQIENSAAVQK 328
            ...|||||:::::.||:.||..:.|..|.:|...|:.||..|.:||:||||::||:|:|..||::
Zfish   266 ANTFCSYIYNSTEPKTVKGGRTITGTALGNLAEVYVEAIRSGKVPCLENAVVSLAKIQNVRAVEQ 330

Human   329 AIAHYDQQMGQKVQLPAETLQELLDLHRVSEREATEVYMKNSFKDVDHLFQKKLAAQLDKKRDDF 393
            |:..|..:|....|.|.:. :||..:|.::|::|.|.::..||.|.|.::|::|..::..:..|.
Zfish   331 ALQIYMTEMLSMAQFPLDP-EELSSIHTLAEKKAIEEFINMSFSDNDQIYQQELMGKIHNEYQDL 394

Human   394 CKQNQEASSDRCSALLQVIFSPLEEEVKAGIYSKPGGYCLFIQKLQDLEKKYYEEPRKGIQAEEI 458
            |:||.:||..:|..:|:.:|.|||..:..|.|.:||||..:...|..|...|....:..|.:||:
Zfish   395 CQQNHQASLMQCQEVLEDVFDPLEMNISNGSYLRPGGYREYRALLAQLTSSYRARTKSQIMSEEV 459

Human   459 LQTYLKSKESVTDAILQTDQILTEKEKEIEVECVKAESAQASAKMVEEMQIKYQQMMEEKEKSYQ 523
            |..:||.||.|.:.|||.|:.|:..|:|.||:.:|.|..|...:.:||.....:|..::.|:::|
Zfish   460 LCMFLKGKEDVGNMILQADESLSAAEQEKEVQMLKNEILQQRQRGLEEQNRLQEQAFKDMERTHQ 524

Human   524 EHVKQLTEKMERERAQLLEEQEKTLTSKLQEQARVLKERCQGESTQLQNEIQKLQKTLKKKTKRY 588
            |||.|:..:||||:.::..:.|:.|.:||:|:..:||:..:.|::::|.||..|:..:.|:.:..
Zfish   525 EHVNQIVHQMEREQERIRRDNERVLEAKLKEREALLKQGFEEEASRMQKEINSLKTDMSKQEESK 589

Human   589 MSHKLKI 595
            .|...|:
Zfish   590 PSTMRKV 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP3NP_060754.2 GTPase domain (Globular). /evidence=ECO:0000250 1..309 171/304 (56%)
GBP 18..280 CDD:280433 153/263 (58%)
GBP_C 282..574 CDD:202427 102/291 (35%)
GBP_C 288..574 CDD:293879 100/285 (35%)
coiled coil 547..558 CDD:293879 4/10 (40%)
gbp2XP_699217.2 P-loop_NTPase 20..281 CDD:304359 152/260 (58%)
GBP_C 284..579 CDD:202427 104/295 (35%)
GBP_C 290..579 CDD:293879 102/289 (35%)
coiled coil 548..559 CDD:293879 4/10 (40%)
coiled coil 568..579 CDD:293879 3/10 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 324 1.000 Domainoid score I6643
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 565 1.000 Inparanoid score I5681
NCBI 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55037
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 1 1.000 - - FOG0000238
OrthoInspector 1 1.000 - - mtm6791
orthoMCL 1 0.900 - - OOG6_100467
Panther 1 1.100 - - LDO PTHR10751
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X242
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.980

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