DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GBP3 and gbp1

DIOPT Version :9

Sequence 1:NP_060754.2 Gene:GBP3 / 2635 HGNCID:4184 Length:595 Species:Homo sapiens
Sequence 2:NP_001016773.1 Gene:gbp1 / 549527 XenbaseID:XB-GENE-6045650 Length:595 Species:Xenopus tropicalis


Alignment Length:581 Identity:293/581 - (50%)
Similarity:397/581 - (68%) Gaps:2/581 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAPEIHMTGPMCLIENTN-GELVANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKNKG 64
            |:.:|||..|:|||||.| .|.|.|.||.:|||.||.|||||||||.||||||||||||||:..|
 Frog     1 MSAQIHMKDPICLIENRNSNEFVINTEAEQILSQITDPVVVVAIVGKYRTGKSYLMNKLAGRKTG 65

Human    65 FSLGSTVKSHTKGIWMWCVPHPKKPEHTLVLLDTEGLGDVKKGDNQNDSWIFTLAVLLSSTLVYN 129
            |.||||::|.||||||||||||.:|.||||||||||||||:|||::||.|||:|||||||.||||
 Frog    66 FPLGSTIQSKTKGIWMWCVPHPCQPSHTLVLLDTEGLGDVEKGDSKNDGWIFSLAVLLSSNLVYN 130

Human   130 SMGTINQQAMDQLYYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVWTLRDFSLDLEADGQPL 194
            |||||:..||:||.|||||:..|:.||:|::.|..:..:|...||.|.|.:|||||.||.||:.:
 Frog   131 SMGTIDNHAMEQLQYVTELSKLIKLKSNPEQEEKNEPDEFKRIFPSFTWCVRDFSLILELDGKKV 195

Human   195 TPDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDLPIHRRKLAQLEKLQDEELDPE 259
            |.||||..||||.:||.::.:::||||.||..:|...||||||.|...|.|.:||:||:::|:.:
 Frog   196 TEDEYLMNSLKLKKGTDKQTQDYNLPRECILHYFHSHKCFVFDQPTSSRNLHRLEELQEQDLEED 260

Human   260 FVQQVADFCSYIFSNSKTKTLSGGIKVNGPRLESLVLTYINAISRGDLPCMENAVLALAQIENSA 324
            ||:|...||.:|.:....|||.||:.|.|..|..|...||..|..|.:||||||||||:.:||:.
 Frog   261 FVKQTRKFCDHIHTQGVAKTLPGGLIVTGRMLAHLTSLYIETIMSGSVPCMENAVLALSVMENTG 325

Human   325 AVQKAIAHYDQQMGQKV-QLPAETLQELLDLHRVSEREATEVYMKNSFKDVDHLFQKKLAAQLDK 388
            |||.|:|.|:..|.:.: :.|.|||||.|.||:.||:||.||::|.||.|.:..|||:....||.
 Frog   326 AVQDALAKYETCMKEHLPRFPTETLQEFLHLHQRSEKEALEVFLKRSFNDENQDFQKEFKNLLDN 390

Human   389 KRDDFCKQNQEASSDRCSALLQVIFSPLEEEVKAGIYSKPGGYCLFIQKLQDLEKKYYEEPRKGI 453
            |..:|.::|:..|::||..::|.:...|||.:..|.:.||||:.||:.....:.::|...||||:
 Frog   391 KMKNFSERNERESTERCEIIIQELSEYLEERISQGEFLKPGGHNLFLVAKMTIMEEYNTTPRKGL 455

Human   454 QAEEILQTYLKSKESVTDAILQTDQILTEKEKEIEVECVKAESAQASAKMVEEMQIKYQQMMEEK 518
            ::.|:||.::.:|:.:..||||.|..||.|||||.....:...|:...:::||.:...|:.||.:
 Frog   456 KSLEVLQEFISNKKGIEAAILQADVSLTAKEKEIAESQAETAEAERQRQILEENKKYLQESMENQ 520

Human   519 EKSYQEHVKQLTEKMERERAQLLEEQEKTLTSKLQEQARVLKERCQGESTQLQNEIQKLQK 579
            :||:::|.|.|.|||:.:|.:|:.|.|:.:..|||||..:|....||....||:||.:|.:
 Frog   521 KKSFEQHEKMLIEKMDADRQKLIAENERVIAQKLQEQNAMLTAGFQGRVNALQSEIDELYR 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP3NP_060754.2 GTPase domain (Globular). /evidence=ECO:0000250 1..309 181/308 (59%)
GBP 18..280 CDD:280433 159/262 (61%)
GBP_C 282..574 CDD:202427 119/292 (41%)
GBP_C 288..574 CDD:293879 116/286 (41%)
coiled coil 547..558 CDD:293879 5/10 (50%)
gbp1NP_001016773.1 P-loop_NTPase 20..281 CDD:304359 158/260 (61%)
GBP_C 283..579 CDD:202427 121/295 (41%)
GBP_C 289..579 CDD:293879 118/289 (41%)
coiled coil 549..560 CDD:293879 5/10 (50%)
coiled coil 569..579 CDD:293879 4/9 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 345 1.000 Domainoid score I7575
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 596 1.000 Inparanoid score I6507
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 1 1.000 - - FOG0000238
OrthoInspector 1 1.000 - - otm54712
Panther 1 1.100 - - O PTHR10751
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X242
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

Return to query results.
Submit another query.