DRSC/TRiP Functional Genomics Resources

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Protein Alignment GBP3 and atln-2

DIOPT Version :9

Sequence 1:NP_060754.2 Gene:GBP3 / 2635 HGNCID:4184 Length:595 Species:Homo sapiens
Sequence 2:NP_502809.2 Gene:atln-2 / 189829 WormBaseID:WBGene00012763 Length:520 Species:Caenorhabditis elegans


Alignment Length:463 Identity:94/463 - (20%)
Similarity:180/463 - (38%) Gaps:93/463 - (20%)


- Green bases have known domain annotations that are detailed below.


Human     6 HMTGPMCLIENTN---GELVANPEALKIL----SAITQPVVVVAIVGLYRTGKSYLMN----KLA 59
            |...|:.:|..::   |:...|..||..:    :...:.:|::::.|.:|.|||:|:|    .|.
 Worm    25 HKVRPVQIIAPSSTQPGKFRLNESALNSVLGHSACANKKIVIISVAGAFRKGKSFLLNFFLEYLY 89

Human    60 GKNK------------------GFSLGSTVKSHTKGIWMWCVP----HPKKPEHTLVLLDTEGLG 102
            ..:|                  ||...:.||..|.|||:|..|    ........:||:||:|..
 Worm    90 SLHKSQQSDSSLEWLTDDCQLHGFHWRAGVKRDTVGIWLWGEPIMIESVTGEMFAVVLMDTQGTF 154

Human   103 DVKKGDNQNDSWIFTLAVLLSSTLVYNSMGTINQQAMDQLYYVTELTHRIRSKSSPDENENEDSA 167
            | .....|....:|.|:.::||..:||.:..|.:.|:..|....|. .||..         |...
 Worm   155 D-NNSTYQQCMTVFALSTIVSSVQIYNVVDNIQEDALQHLSLFVEY-GRIAM---------EQPH 208

Human   168 DFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKK 232
            :|...|...|:.:|||....|.:.......::|:   .:.|...::.:.....|..:|::|...:
 Worm   209 NFGKPFQQLVFCVRDFKNQEEYEFGENGGTDFLD---NVLQTNPEQPEEIKQVRELLREYFEDIQ 270

Human   233 CFVFDLPIHRRKLAQLEKLQD--EELDPEFVQQVADFCSYIFS---------NSKTKTLSGGIKV 286
            |::  ||....|:|:.:..:.  ::|.|.|.:::......:..         |.||.|..     
 Worm   271 CYL--LPHPGYKVAERQSFRGHVKDLRPLFREELKKMVPNLLGPHILKPKIVNGKTVTCR----- 328

Human   287 NGPRLESLVLTYINAISRGDLPCMENAVLALAQIENSAAVQKAIAHYDQQMGQKVQLPAETLQEL 351
               ::......|..:.....||..::.:.|.|::....|..:|..:|.:.|.:..          
 Worm   329 ---KMIQYFKEYAASFDGETLPQPQSILNANAKLICIEAAHEAKVNYSRGMDRST---------- 380

Human   352 LDLHRVSEREATEVYMKNSF--------------KDVDHLFQKKLAAQLDKKRDDFCKQNQEASS 402
            .....:||::..|.::|:..              |:|.:|..:||...::.:.:.:.:.|:....
 Worm   381 YGTRMMSEKKLLEAHIKHGITALNIFDKCPRIGAKEVRNLLLEKLQEDINAELEKYKRLNEAKRV 445

Human   403 DRC-SALL 409
            ..| ||:|
 Worm   446 TGCASAML 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP3NP_060754.2 GTPase domain (Globular). /evidence=ECO:0000250 1..309 73/346 (21%)
GBP 18..280 CDD:280433 67/305 (22%)
GBP_C 282..574 CDD:202427 23/143 (16%)
GBP_C 288..574 CDD:293879 23/137 (17%)
coiled coil 547..558 CDD:293879
atln-2NP_502809.2 P-loop_NTPase 41..310 CDD:393306 64/284 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2037
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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