DRSC/TRiP Functional Genomics Resources

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Protein Alignment GBP2 and gbp1

DIOPT Version :9

Sequence 1:NP_004111.2 Gene:GBP2 / 2634 HGNCID:4183 Length:591 Species:Homo sapiens
Sequence 2:NP_001016773.1 Gene:gbp1 / 549527 XenbaseID:XB-GENE-6045650 Length:595 Species:Xenopus tropicalis


Alignment Length:588 Identity:289/588 - (49%)
Similarity:409/588 - (69%) Gaps:2/588 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAPEINLPGPMSLIDN-TKGQLVVNPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKKNG 64
            |:.:|::..|:.||:| ...:.|:|.||.:|||.||.|||||||||.||||||||||||||:|.|
 Frog     1 MSAQIHMKDPICLIENRNSNEFVINTEAEQILSQITDPVVVVAIVGKYRTGKSYLMNKLAGRKTG 65

Human    65 FSLGSTVKSHTKGIWMWCVPHPKKPEHTLVLLDTEGLGDIEKGDNENDSWIFALAILLSSTFVYN 129
            |.||||::|.||||||||||||.:|.|||||||||||||:||||::||.|||:||:||||..|||
 Frog    66 FPLGSTIQSKTKGIWMWCVPHPCQPSHTLVLLDTEGLGDVEKGDSKNDGWIFSLAVLLSSNLVYN 130

Human   130 SMGTINQQAMDQLHYVTELTDRIKANSSPGNNSVDDSADFVSFFPAFVWTLRDFTLELEVDGEPI 194
            |||||:..||:||.|||||:..||..|:|.....::..:|...||:|.|.:|||:|.||:||:.:
 Frog   131 SMGTIDNHAMEQLQYVTELSKLIKLKSNPEQEEKNEPDEFKRIFPSFTWCVRDFSLILELDGKKV 195

Human   195 TADDYLELSLKLRKGTDKKSKSFNDPRLCIRKFFPKRKCFVFDWPAPKKYLAHLEQLKEEELNPD 259
            |.|:||..||||:|||||:::.:|.||.||..:|...||||||.|...:.|..||:|:|::|..|
 Frog   196 TEDEYLMNSLKLKKGTDKQTQDYNLPRECILHYFHSHKCFVFDQPTSSRNLHRLEELQEQDLEED 260

Human   260 FIEQVAEFCSYILSHSNVKTLSGGIPVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSA 324
            |::|..:||.:|.:....|||.||:.|.|..|..|...|:..|.||.:||||||||||:.:||:.
 Frog   261 FVKQTRKFCDHIHTQGVAKTLPGGLIVTGRMLAHLTSLYIETIMSGSVPCMENAVLALSVMENTG 325

Human   325 AVEKAIAHYEQQMGQKV-QLPTETLQELLDLHRDSEREAIEVFMKNSFKDVDQMFQRKLGAQLEA 388
            ||:.|:|.||..|.:.: :.|||||||.|.||:.||:||:|||:|.||.|.:|.||::....|:.
 Frog   326 AVQDALAKYETCMKEHLPRFPTETLQEFLHLHQRSEKEALEVFLKRSFNDENQDFQKEFKNLLDN 390

Human   389 RRDDFCKQNSKASSDCCMALLQDIFGPLEEDVKQGTFSKPGGYRLFTQKLQELKNKYYQVPRKGI 453
            :..:|.::|.:.|::.|..::|::...|||.:.||.|.||||:.||......:..:|...||||:
 Frog   391 KMKNFSERNERESTERCEIIIQELSEYLEERISQGEFLKPGGHNLFLVAKMTIMEEYNTTPRKGL 455

Human   454 QAKEVLKKYLESKEDVADALLQTDQSLSEKEKAIEVERIKAESAEAAKKMLEEIQKKNEEMMEQK 518
            ::.|||::::.:|:.:..|:||.|.||:.|||.|...:.:...||..:::|||.:|..:|.||.:
 Frog   456 KSLEVLQEFISNKKGIEAAILQADVSLTAKEKEIAESQAETAEAERQRQILEENKKYLQESMENQ 520

Human   519 EKSYQEHVKQLTEKMERDRAQLMAEQEKTLALKLQEQERLLKEGFENESKRLQKDIWDIQMRSKS 583
            :||:::|.|.|.|||:.||.:|:||.|:.:|.|||||..:|..||:.....||.:|.::..|:::
 Frog   521 KKSFEQHEKMLIEKMDADRQKLIAENERVIAQKLQEQNAMLTAGFQGRVNALQSEIDELYRRNRA 585

Human   584 LEP 586
            .:|
 Frog   586 SKP 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP2NP_004111.2 GTPase domain (Globular). /evidence=ECO:0000250 1..309 172/308 (56%)
GBP 18..280 CDD:308078 154/261 (59%)
GBP_C 282..578 CDD:308475 125/296 (42%)
gbp1NP_001016773.1 P-loop_NTPase 20..281 CDD:304359 154/260 (59%)
GBP_C 283..579 CDD:202427 125/295 (42%)
GBP_C 289..579 CDD:293879 122/289 (42%)
coiled coil 549..560 CDD:293879 6/10 (60%)
coiled coil 569..579 CDD:293879 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 345 1.000 Domainoid score I7575
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 596 1.000 Inparanoid score I6507
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 1 1.000 - - FOG0000238
OrthoInspector 1 1.000 - - otm54712
Panther 1 1.100 - - O PTHR10751
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X242
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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