DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GBP1 and gbp1

DIOPT Version :9

Sequence 1:NP_002044.2 Gene:GBP1 / 2633 HGNCID:4182 Length:592 Species:Homo sapiens
Sequence 2:NP_001002343.1 Gene:gbp1 / 436615 ZFINID:ZDB-GENE-040718-32 Length:621 Species:Danio rerio


Alignment Length:588 Identity:264/588 - (44%)
Similarity:394/588 - (67%) Gaps:9/588 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     1 MASEIHMTGPMCLIENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF 65
            |:....|..|:||:||.||.|....:|:..||.|.:|:|||::|||||||||||||:|||::.||
Zfish     1 MSKPTMMPSPICLVENVNGSLSICKDAIDFLSNINEPVVVVSVVGLYRTGKSYLMNRLAGQQTGF 65

Human    66 SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNS 130
            :||:|::|.||||||||||||||.||.||||||||||||:|||::||.|||.||||||||.||||
Zfish    66 ALGNTIESKTKGIWMWCVPHPKKQGHTLVLLDTEGLGDVDKGDSKNDGWIFCLAVLLSSTLVYNS 130

Human   131 IGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQP 195
            .|||:..|:::|:|:||||.:|:.:::...:|.:.||| .||.|||.|.|.:|||:|||..||:.
Zfish   131 RGTIDNSALEKLHYITELTEQIKIRTAEAADEEDEEDS-KFVLFFPSFTWVVRDFTLDLVIDGKN 194

Human   196 LTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDP 260
            :..|:||.::|:|:||.::|...:||||.|||.:||.:|||||..|....|:.|||.||:::|.|
Zfish   195 VNEDQYLDFALQLRKGNNKKALEYNLPRQCIRNYFPSRKCFVFPSPASPEKMKQLESLQEKDLVP 259

Human   261 EFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENS 325
            :|::....||.:||.||..|||.||.:|.|..|..|...||:.||||.:||::|||:|||.:||.
Zfish   260 DFLEVTGRFCEHIFRNSVVKTLKGGHKVTGKLLGHLAKIYVDTISSGKVPCLDNAVVALANLENK 324

Human   326 AAVQKAIAHYEQQMGQKVQLPTETLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEK 390
            .||::|...||:.|.:..:.....:.|:...|:.....|...|::.||||.    ::|...||::
Zfish   325 CAVEEAFKVYERGMEEVKKTFPVNVDEISSEHQRFSSLANAEFMKRSFKDE----KQEYINQLKE 385

Human   391 KRDDF--C--KQNQEASSDRCSALLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEP 451
            |.|.:  |  :.|..||..:|..||:.:||.:.::::.|:||:||||.|:.:....:.:||..||
Zfish   386 KIDVYYGCLLEDNGLASKKKCEDLLKDLFSEMNKKLQDGVYSQPGGYELYCKDRDVIVEKYRREP 450

Human   452 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLQEMQRKNEQM 516
            .||:.||.:|..:|..:.:..::||.||..|||.:|:|:.|:.:....|...:..||.:.::|:|
Zfish   451 NKGVLAEAVLHEFLNERGAEANSILYTDTKLTENDKKIQEEKERNALMQQKCEEEQEKRIESERM 515

Human   517 MEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 581
            |..::....:.:||:.||.|.:|.|:.:|.|:.:..||:|||::|.:||::.:.::..||.||:.
Zfish   516 MAAEKVRQDDQIKQMQEKFEKEREQMQQETEKAIDSKLKEQEEMLNKGFKERADLLSEEINDLKK 580

Human   582 KMR 584
            :.:
Zfish   581 EKK 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP1NP_002044.2 GTPase domain (Globular) 1..311 171/309 (55%)
GBP 18..282 CDD:280433 150/263 (57%)
GBP_C 284..580 CDD:202427 104/299 (35%)
GBP_C 290..580 CDD:293879 101/293 (34%)
coiled coil 549..560 CDD:293879 5/10 (50%)
coiled coil 569..580 CDD:293879 3/10 (30%)
gbp1NP_001002343.1 P-loop_NTPase 18..281 CDD:328724 150/263 (57%)
GBP_C 283..579 CDD:308475 104/299 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 324 1.000 Domainoid score I6643
eggNOG 1 0.900 - - E1_KOG2037
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H133759
Inparanoid 00.000 Not matched by this tool.
NCBI 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55037
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 1 1.000 - - FOG0000238
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100467
Panther 1 1.100 - - O PTHR10751
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8153
SonicParanoid 1 1.000 - - X242
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.820

Return to query results.
Submit another query.