DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GBP1 and mto1

DIOPT Version :9

Sequence 1:NP_002044.2 Gene:GBP1 / 2633 HGNCID:4182 Length:592 Species:Homo sapiens
Sequence 2:NP_588284.1 Gene:mto1 / 2539467 PomBaseID:SPCC417.07c Length:1115 Species:Schizosaccharomyces pombe


Alignment Length:568 Identity:118/568 - (20%)
Similarity:206/568 - (36%) Gaps:172/568 - (30%)


- Green bases have known domain annotations that are detailed below.


Human   141 QLYYVTELTHRIRSKSSPDEN--ENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLT 203
            ||..:.|..:.:.|:.:|..|  ..::.|.....|...|    |:|....|..:.:...|...||
pombe   190 QLTPIKEERNYLHSQDAPTTNALSKKISDILIPASAMKD----LKDRKNALAKEFEESQPGSSLT 250

Human   204 YSLKLKKGTSQKDETFNLPRLCIRKFFPKKKC-FVFDRPVHRRKLAQLEKLQDEELDPEFVQQVA 267
            ...:.....:.:.|.|.|          |.|| |::|         ||.|..|:|:. :.::|..
pombe   251 LKEQANVIDNLRKEVFGL----------KLKCYFLYD---------QLNKFHDQEVQ-DIMKQNI 295

Human   268 DFCSYIFSNSKT-----KTLSG-----------GIQVNGPRLESLVL---TYVNAISSGDLPCME 313
            |..:......:.     |.:||           .:....|...:|:.   .|..|:|  :|...:
pombe   296 DLKTLTMELQRAVAGYEKKISGLESRIKPDQSFNLSTPSPAPSNLITLQSRYSQALS--ELETTK 358

Human   314 NAVLALAQIENSAAVQKAIAHYEQ----------------------------QMGQKVQLPT--- 347
            .|..||.: |.|.....::..|.:                            |:.:||.:|.   
pombe   359 RAFAALRK-EKSKKTNYSVGAYNEDRNVLSNMLDNERREKEALLQELESLRVQLSKKVPMPAKNT 422

Human   348 -----ETLQ---ELLDLHRDSEREAIEVFIRSSFKDVDHLFQ--KELAAQLEKKRDDFCKQNQEA 402
                 ||||   |||.:....:.||:  .:|.  ::.|.|.:  :||...|...:.:...:.:.:
pombe   423 DERVIETLQRSNELLRMDISMQNEAL--LLRK--QENDRLVKQVEELTVALNSGKMNAIVEAESS 483

Human   403 SSDRCSALLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY----------YEEPRKGIQ- 456
            .::...:::.......|:.::.        .||:.| |||:::.|          :.|....:| 
pombe   484 KNELWDSMMVSRMKTQEQSIEL--------TRLYKQ-LQDIEEDYENKLMRMEQQWREDVDQLQE 539

Human   457 -AEEILQTYLKSKESMTDAILQTD-------QTLTEKEKEI-------------------EVERV 494
             .|||.|....:||.::.:..::|       :..||.|:||                   |||::
pombe   540 YVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEKL 604

Human   495 KAESAQAS-------------AKMLQEMQRKNEQMMEQKERSYQEHLKQL-----------TEKM 535
            ..|..|.|             .|.||.::.:|.:..|.........|:||           .|..
pombe   605 TDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLRKENE 669

Human   536 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583
            ||.:|..|||.|   .:|..:.:.||.|  |.||  :.:::..|:|:|
pombe   670 ENKQVIALKESE---LVKSNDNKLLLNE--QIES--LNDQLSQLKTEM 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP1NP_002044.2 GTPase domain (Globular) 1..311 39/191 (20%)
GBP 18..282 CDD:280433 31/148 (21%)
GBP_C 284..580 CDD:202427 83/412 (20%)
GBP_C 290..580 CDD:293879 82/395 (21%)
coiled coil 549..560 CDD:293879 1/10 (10%)
coiled coil 569..580 CDD:293879 1/10 (10%)
mto1NP_588284.1 Cnn_1N 252..319 CDD:285263 18/86 (21%)
Fib_alpha 511..611 CDD:285864 23/100 (23%)
Mto2_bdg 1052..1101 CDD:289572
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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