DRSC/TRiP Functional Genomics Resources

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Protein Alignment GBP1 and gbp5

DIOPT Version :9

Sequence 1:NP_002044.2 Gene:GBP1 / 2633 HGNCID:4182 Length:592 Species:Homo sapiens
Sequence 2:NP_001120244.2 Gene:gbp5 / 100145295 XenbaseID:XB-GENE-5756296 Length:636 Species:Xenopus tropicalis


Alignment Length:581 Identity:307/581 - (52%)
Similarity:421/581 - (72%) Gaps:7/581 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     7 MTGPMCLIENTNGR-LMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGST 70
            |..|||||.|..|. |:.|.|||:||..||||:|||||||.||||||||||||||.:.||:||||
 Frog     6 MEEPMCLIGNKEGEDLIVNQEALQILLKITQPVVVVAIVGKYRTGKSYLMNKLAGARNGFALGST 70

Human    71 VQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTIN 135
            |||.||||||||||||.|.|:.||||||||||||||||::||:|||:||:|||||.||||:|||:
 Frog    71 VQSKTKGIWMWCVPHPTKQGNTLVLLDTEGLGDVEKGDSKNDAWIFSLAILLSSTLVYNSMGTID 135

Human   136 QQAMDQLYYVTELTHRIRSKSSPDE---NENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLT 197
            |||||.|:||||||..|:.||  ||   .|.|.::|.:|..|||.|:|.:|||:|.||.:|.|:|
 Frog   136 QQAMDNLHYVTELTELIKVKS--DEAQATEEEDDESGEFKRFFPSFIWCVRDFTLKLEKNGSPIT 198

Human   198 PDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEF 262
            .|:||..:|:||||..:|.:.:||||.|||.:|...||||||||.....|.:||:||:.||:.:|
 Frog   199 EDQYLLDALELKKGVGKKVQDYNLPRQCIRHYFHSHKCFVFDRPASTLALQRLEELQESELESKF 263

Human   263 VQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAA 327
            |::.|:|||.|:..|..|||.||..|.|..|.:|.::|..||.||.:|||||||:||||||||.|
 Frog   264 VEKAAEFCSCIYGKSNAKTLVGGYTVTGRLLGNLAVSYTEAIRSGSIPCMENAVIALAQIENSRA 328

Human   328 VQKAIAHYEQQMGQKV-QLPTETLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKK 391
            ||:|:..||::|.::: :.||||.:|.|.:|::.|:||.:||:..||||.:..:||:|..:|.:|
 Frog   329 VQEALTKYEEEMSKQIAKFPTETQEEFLSIHQECEKEATQVFMGLSFKDENLEYQKQLIDELAEK 393

Human   392 RDDFCKQNQEASSDRCSALLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQ 456
            :..:...|:|.|:.:|.|:||.:...||.|:..|.:||||||..|:.:...|..:|.....||::
 Frog   394 KSKYSLYNEEESAKKCKAILQKLSENLEREILNGKFSKPGGYTQFISEKNLLVDEYNRTKGKGVK 458

Human   457 AEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLQEMQRKNEQMMEQKE 521
            |.||||.:|..||::..||||.||:||.|||||..:|.:.|:|:...::::|..|:.|:.:|.::
 Frog   459 ALEILQEFLNEKENVEAAILQADQSLTHKEKEIAEQRARTETAEREKQIVEENNRRLEKDIEAQK 523

Human   522 RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582
            :|.:||.|.:.||||.:|.:|:::.|..:..||:|||::|.:||.|||.::||:|:|::.|
 Frog   524 KSLEEHKKMMEEKMEEERKKLMEQNEWMIKEKLKEQEEMLTKGFHKESEMLKNQIEDIKRK 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP1NP_002044.2 GTPase domain (Globular) 1..311 187/307 (61%)
GBP 18..282 CDD:280433 167/267 (63%)
GBP_C 284..580 CDD:202427 130/296 (44%)
GBP_C 290..580 CDD:293879 127/290 (44%)
coiled coil 549..560 CDD:293879 5/10 (50%)
coiled coil 569..580 CDD:293879 5/10 (50%)
gbp5NP_001120244.2 P-loop_NTPase 19..283 CDD:304359 166/265 (63%)
GBP_C 285..582 CDD:202427 130/296 (44%)
GBP_C 291..582 CDD:293879 127/290 (44%)
coiled coil 551..562 CDD:293879 5/10 (50%)
coiled coil 571..582 CDD:293879 5/10 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
NCBI 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55037
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10751
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.030

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