DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GBP1 and gbp5

DIOPT Version :10

Sequence 1:NP_002044.2 Gene:GBP1 / 2633 HGNCID:4182 Length:592 Species:Homo sapiens
Sequence 2:NP_001120244.2 Gene:gbp5 / 100145295 XenbaseID:XB-GENE-5756296 Length:636 Species:Xenopus tropicalis


Alignment Length:581 Identity:307/581 - (52%)
Similarity:421/581 - (72%) Gaps:7/581 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     7 MTGPMCLIENTNGR-LMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGST 70
            |..|||||.|..|. |:.|.|||:||..||||:|||||||.||||||||||||||.:.||:||||
 Frog     6 MEEPMCLIGNKEGEDLIVNQEALQILLKITQPVVVVAIVGKYRTGKSYLMNKLAGARNGFALGST 70

Human    71 VQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTIN 135
            |||.||||||||||||.|.|:.||||||||||||||||::||:|||:||:|||||.||||:|||:
 Frog    71 VQSKTKGIWMWCVPHPTKQGNTLVLLDTEGLGDVEKGDSKNDAWIFSLAILLSSTLVYNSMGTID 135

Human   136 QQAMDQLYYVTELTHRIRSKSSPDE---NENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLT 197
            |||||.|:||||||..|:.||  ||   .|.|.::|.:|..|||.|:|.:|||:|.||.:|.|:|
 Frog   136 QQAMDNLHYVTELTELIKVKS--DEAQATEEEDDESGEFKRFFPSFIWCVRDFTLKLEKNGSPIT 198

Human   198 PDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEF 262
            .|:||..:|:||||..:|.:.:||||.|||.:|...||||||||.....|.:||:||:.||:.:|
 Frog   199 EDQYLLDALELKKGVGKKVQDYNLPRQCIRHYFHSHKCFVFDRPASTLALQRLEELQESELESKF 263

Human   263 VQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAA 327
            |::.|:|||.|:..|..|||.||..|.|..|.:|.::|..||.||.:|||||||:||||||||.|
 Frog   264 VEKAAEFCSCIYGKSNAKTLVGGYTVTGRLLGNLAVSYTEAIRSGSIPCMENAVIALAQIENSRA 328

Human   328 VQKAIAHYEQQMGQKV-QLPTETLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKK 391
            ||:|:..||::|.::: :.||||.:|.|.:|::.|:||.:||:..||||.:..:||:|..:|.:|
 Frog   329 VQEALTKYEEEMSKQIAKFPTETQEEFLSIHQECEKEATQVFMGLSFKDENLEYQKQLIDELAEK 393

Human   392 RDDFCKQNQEASSDRCSALLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQ 456
            :..:...|:|.|:.:|.|:||.:...||.|:..|.:||||||..|:.:...|..:|.....||::
 Frog   394 KSKYSLYNEEESAKKCKAILQKLSENLEREILNGKFSKPGGYTQFISEKNLLVDEYNRTKGKGVK 458

Human   457 AEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLQEMQRKNEQMMEQKE 521
            |.||||.:|..||::..||||.||:||.|||||..:|.:.|:|:...::::|..|:.|:.:|.::
 Frog   459 ALEILQEFLNEKENVEAAILQADQSLTHKEKEIAEQRARTETAEREKQIVEENNRRLEKDIEAQK 523

Human   522 RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582
            :|.:||.|.:.||||.:|.:|:::.|..:..||:|||::|.:||.|||.::||:|:|::.|
 Frog   524 KSLEEHKKMMEEKMEEERKKLMEQNEWMIKEKLKEQEEMLTKGFHKESEMLKNQIEDIKRK 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP1NP_002044.2 GTPase domain (Globular). /evidence=ECO:0000305|PubMed:10676968 1..311 187/307 (61%)
GBP 18..282 CDD:460516 167/267 (63%)
GBP_C 284..580 CDD:460721 130/296 (44%)
gbp5NP_001120244.2 GBP 19..283 CDD:460516 166/265 (63%)
GBP_C 285..582 CDD:460721 130/296 (44%)

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