DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATA6 and pnr

DIOPT Version :9

Sequence 1:NP_005248.2 Gene:GATA6 / 2627 HGNCID:4174 Length:595 Species:Homo sapiens
Sequence 2:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster


Alignment Length:349 Identity:141/349 - (40%)
Similarity:166/349 - (47%) Gaps:83/349 - (23%)


- Green bases have known domain annotations that are detailed below.


Human   227 QASADSPPY-GSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGA 290
            |::.|.|.: |.........|:....|.::|.||:|...|..|      |.......|||||..:
  Fly    15 QSTRDYPHFSGDYQNVTLSAASASTSASASATHVAAVKMYHSS------AVAAYTDLAAAGSAAS 73

Human   291 GGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHH---------------HHHPSPYSPY 340
            .||..|.|.........|.|.      |.|..|:|...|.               ..|...|||.
  Fly    74 AGVGVGVSGYHQQAVNAPVYV------PSNRQYNHVAAHFGSAAAQNAWTTEGFGSAHAQFYSPN 132

Human   341 VGAPLTPAWPAGPFETPVLHSLQSRAGAPLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDG 405
             .|.:..:|          .|....:|.....|...:.|.  ...|.|||||||:|.||||||||
  Fly   133 -AAVMMGSW----------RSAYDPSGFQRSSPYESAMDF--QFGEGRECVNCGAISTPLWRRDG 184

Human   406 TGHYLCNACGLYSKMNGLSRPLIKPQKRVPS---SRRLGLSCANCHTTTTTLWRRNAEGEPVCNA 467
            ||||||||||||.||||::||||||.||:.|   :||:||.|.||.|.||||||||.:|||||||
  Fly   185 TGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNA 249

Human   468 CGLYMKLHGVPRPLAMKKEGIQTRKRKPKNINKSKTCSGNSNNSIPMTPTSTSSNSDDCSKNTSP 532
            ||||.|||||.|||||:|:||||||||||     ||.||                          
  Fly   250 CGLYYKLHGVNRPLAMRKDGIQTRKRKPK-----KTGSG-------------------------- 283

Human   533 TTQPTASGAGAPVMTGAGESTNPE 556
                :|.|||    ||:|..:..|
  Fly   284 ----SAVGAG----TGSGTGSTLE 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATA6NP_005248.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 14..71
GATA-N 147..377 CDD:283099 38/165 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..255 6/28 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..339 15/67 (22%)
ZnF_GATA 388..435 CDD:214648 40/46 (87%)
ZnF_GATA 389..434 CDD:238123 38/44 (86%)
ZnF_GATA 441..488 CDD:214648 36/46 (78%)
ZnF_GATA 443..494 CDD:238123 40/50 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 482..561 25/75 (33%)
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 39/47 (83%)
ZnF_GATA 168..212 CDD:238123 37/43 (86%)
ZnF_GATA 223..270 CDD:214648 36/46 (78%)
ZnF_GATA 226..276 CDD:238123 40/49 (82%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I9610
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 223 1.000 Inparanoid score I3525
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm40560
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 1 1.000 - - X1091
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
109.950

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