DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATA6 and grn

DIOPT Version :9

Sequence 1:NP_005248.2 Gene:GATA6 / 2627 HGNCID:4174 Length:595 Species:Homo sapiens
Sequence 2:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster


Alignment Length:631 Identity:207/631 - (32%)
Similarity:264/631 - (41%) Gaps:179/631 - (28%)


- Green bases have known domain annotations that are detailed below.


Human     5 DGGWCLPKR--FGAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDT 67
            :||...|:.  .|:||:..:.|.       .:..|..||:.||...|...|.||.|...|..:..
  Fly    30 NGGGVSPQTNGLGSAGSSLAHSH-------HSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSA 87

Human    68 EAAA---GPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGN--LSSWEDLLLFTDLDQAATASKL 127
            ..|.   |...|  ...||..|....|...::|.|..|..:  ||.|    |.::....|.||  
  Fly    88 FYALESNGHHRR--YYPSYHQHTSRMPSTHASPQVCRPHFHTPLSPW----LTSEHKSFAPAS-- 144

Human   128 LWSSRGAKLSPFA-PEQPE---------EMYQTLAA------------------LSSQGPAAYDG 164
            .||     :..|| |::|:         :.:||.||                  ....||:.|..
  Fly   145 AWS-----MGQFACPQEPQVEHKLGQMGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPSEYQA 204

Human   165 APGGFVHSAAAAAAAAAAASSPVYV-PTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWP-- 226
            ....|:|..|..:.:...||..:.: |:.:.||          .|||     :|....|...|  
  Fly   205 VMNAFMHQQATGSTSLTDASCALDIKPSIQNGS----------ASGS-----SGSGTTHTSTPKQ 254

Human   227 ------------------------------QASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSA 261
                                          |..:.|....|...:|...||    |.|.:|.|:|
  Fly   255 REGTASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSAA----AASLSAAVAA 315

Human   262 RFPYSPSPPMANGAAREPGGYAAAGSGGAGG---VSGG--------------------------- 296
            ....| |..:.:|.|:   .|::.||||.||   .|||                           
  Fly   316 SAATS-SNGLFDGTAQ---AYSSGGSGGGGGGGSGSGGYDTSSYASYHHAAAHHQAAAVAAANMF 376

Human   297 -GSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHH--HHHPSPYSPYVGAPLTPAWPAG----PF 354
             .||:||...|.    |::||:    .:|||||||  |||....|...|...:....||    ..
  Fly   377 QSSSVAAAAVRH----SMAAAQ----AHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGMGSMSG 433

Human   355 ETPVLHSLQSRAGA----------PLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDGTGHY 409
            .:....||...:||          ..||...|...     :|.|||||||:..||||||||||||
  Fly   434 NSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTS-----AEGRECVNCGATSTPLWRRDGTGHY 493

Human   410 LCNACGLYSKMNGLSRPLIKPQKRV------PSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNAC 468
            ||||||||.||||.:||||||::|:      .:::|.|.|||||.|||||||||||.||||||||
  Fly   494 LCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNAC 558

Human   469 GLYMKLHGVPRPLAMKKEGIQTRKRKPKNINKSKTCSGNSNNSIPM 514
            |||.|||.|.|||.|||||||||.||..  :|||...|.....:|:
  Fly   559 GLYYKLHNVNRPLTMKKEGIQTRNRKLS--SKSKKKKGLGGGCLPI 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATA6NP_005248.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 14..71 15/56 (27%)
GATA-N 147..377 CDD:283099 74/327 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..255 13/78 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..339 27/85 (32%)
ZnF_GATA 388..435 CDD:214648 38/52 (73%)
ZnF_GATA 389..434 CDD:238123 36/44 (82%)
ZnF_GATA 441..488 CDD:214648 39/46 (85%)
ZnF_GATA 443..494 CDD:238123 43/50 (86%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 482..561 16/33 (48%)
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 38/46 (83%)
ZnF_GATA 473..517 CDD:238123 36/43 (84%)
ZnF_GATA 529..578 CDD:214648 40/48 (83%)
ZnF_GATA 533..583 CDD:238123 43/49 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.840

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