DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATA2 and grn

DIOPT Version :9

Sequence 1:NP_001139133.1 Gene:GATA2 / 2624 HGNCID:4171 Length:480 Species:Homo sapiens
Sequence 2:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster


Alignment Length:625 Identity:201/625 - (32%)
Similarity:251/625 - (40%) Gaps:250/625 - (40%)


- Green bases have known domain annotations that are detailed below.


Human    54 SQGNPYYA---NPAHARARVSYSPAHARL----TGGQMCRPHLLHSPGLPWLDGGKAALSAAAAH 111
            |..:.:||   |..|.|...||....:|:    ...|:|||| .|:|..|||.....:.:.|:| 
  Fly    83 SDMSAFYALESNGHHRRYYPSYHQHTSRMPSTHASPQVCRPH-FHTPLSPWLTSEHKSFAPASA- 145

Human   112 HHNPWTVSPFSKTPLHPSAAGGPGGPLSVYPGAGGGSGGGSGSSVASLTPTAAHSGSHLFGFPPT 176
                |::..|: .|..|......            |..|.|..:.|        :|.|.|.||||
  Fly   146 ----WSMGQFA-CPQEPQVEHKL------------GQMGQSHQTTA--------AGQHSFPFPPT 185

Human   177 PPKEVSPDPSTTGAA-------------------------------SPASSSAGGSAARG----- 205
            |||:.:||...||.:                               |..:.||.||:..|     
  Fly   186 PPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTS 250

Human   206 --EDKDGV----------------KYQVSLTESMKMESGSPLRPGLATMGTQPAT---------- 242
              :.::|.                :.|....:..:.:|.|.......|..:..|.          
  Fly   251 TPKQREGTASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSAAAASLSAAVAA 315

Human   243 ---------------------------------HHPIPTYPSYVPAAAHDY-------------- 260
                                             .:...:|.||..||||..              
  Fly   316 SAATSSNGLFDGTAQAYSSGGSGGGGGGGSGSGGYDTSSYASYHHAAAHHQAAAVAAANMFQSSS 380

Human   261 -------------------------------SSGLFHPGGFLGGPA--SSFTPKQ---------- 282
                                           ||||...||.:||.|  .|.:...          
  Fly   381 VAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGHS 445

Human   283 ----------------RSKARSCSEGRECVNCGATATPLWRRDGTGHYLCNACGLYHKMNGQNRP 331
                            |:|.|:.:|||||||||||:||||||||||||||||||||:||||||||
  Fly   446 GAGSNAGSNCLDVKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 510

Human   332 LIKPKRRL------SAARRAGTCCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNVNRPLTMKK 390
            ||||||||      |||:||||.||||:|||||||||||:|:|||||||||||||||||||||||
  Fly   511 LIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKK 575

Human   391 EGIQTRNRKMSNKSKKSK-KGAECFEELSKCMQEKSSPFSAAALAGHMAPVGHLPP--------- 445
            |||||||||:|:||||.| .|..|.                 .:.||:. :|...|         
  Fly   576 EGIQTRNRKLSSKSKKKKGLGGGCL-----------------PIGGHLG-MGDFKPLDPSKGFGG 622

Human   446 -FSHS----GHILPTPTPIHPSSSLSFGHPHPSSMVTAMG 480
             ||.|    ||:   .:.:||:.:    |.|.|.....||
  Fly   623 GFSASMAQHGHL---SSGLHPAHA----HMHGSWYTGGMG 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATA2NP_001139133.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..209 27/127 (21%)
ZnF_GATA 294..344 CDD:238123 47/55 (85%)
ZnF_GATA 349..398 CDD:238123 45/48 (94%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 448..480 8/35 (23%)
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 44/46 (96%)
ZnF_GATA 473..517 CDD:238123 41/43 (95%)
ZnF_GATA 529..578 CDD:214648 44/48 (92%)
ZnF_GATA 533..583 CDD:238123 45/49 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8437
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 277 1.000 Inparanoid score I2946
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1240204at2759
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm42218
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 1 1.000 - - X385
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1211.960

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