DRSC/TRiP Functional Genomics Resources

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Protein Alignment ND2 and ND2

DIOPT Version :9

Sequence 1:YP_665630.1 Gene:ND2 / 26194 RGDID:620556 Length:346 Species:Rattus norvegicus
Sequence 2:YP_009047266.1 Gene:ND2 / 19893529 FlyBaseID:FBgn0013680 Length:341 Species:Drosophila melanogaster


Alignment Length:327 Identity:130/327 - (39%)
Similarity:187/327 - (57%) Gaps:32/327 - (9%)


- Green bases have known domain annotations that are detailed below.


  Rat     8 IIYFTI-LMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIIL 71
            |::.|| ::|.:||::|::.|..|:|||::||:.||||::..:..||||:.||||||..||.::|
  Fly     8 ILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLL 72

  Rat    72 LVIILNYKQSGMWTLQQQTNNMLLNMMLIS-LAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQK 135
            ...||...::.|   ..:.|....:|:::| |.:|.|.||||:|.|.:.:|:.....|:|:||||
  Fly    73 FSSILLMLKNNM---NNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQK 134

  Rat   136 IAPLSILYQF---YQLLNPTITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYN 197
            ||||.::...   |.||      |..|.||.:||.||||||..||:||:|||.|:|||.:.|..:
  Fly   135 IAPLMLISYLNIKYLLL------ISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMIS 193

  Rat   198 PNLTLLNLTIYILLTVPMFITLMTN--SATTINTLSLAWNKTPMILTMTSII-LLSLGGLPPLTG 259
            .::.|:....|..|:  ..:|.|.|  ....:|.| .:|.....||..|..: .||||||||..|
  Fly   194 ESIWLIYFFFYSFLS--FVLTFMFNIFKLFHLNQL-FSWFVNSKILKFTLFMNFLSLGGLPPFLG 255

  Rat   260 FLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYS------------MSLTMFPTNNNSK 312
            |||||.:|.:|...|...:.|||.:..|::||||.|:.||            |.:.|...|.|..
  Fly   256 FLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMY 320

  Rat   313 MI 314
            ||
  Fly   321 MI 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ND2YP_665630.1 ND2 1..326 CDD:177167 130/327 (40%)
ND2YP_009047266.1 ND2 1..340 CDD:214442 130/327 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341729
Domainoid 1 1.000 174 1.000 Domainoid score I3567
eggNOG 1 0.900 - - E1_COG1007
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 203 1.000 Inparanoid score I3671
OMA 1 1.010 - - QHG46773
OrthoDB 1 1.010 - - D1153818at2759
OrthoFinder 1 1.000 - - FOG0002463
OrthoInspector 1 1.000 - - oto97006
orthoMCL 1 0.900 - - OOG6_102147
Panther 1 1.100 - - LDO PTHR46552
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2194
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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