DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant4 and Galntl6

DIOPT Version :9

Sequence 1:NP_001137779.1 Gene:Pgant4 / 261610 FlyBaseID:FBgn0051956 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001129228.1 Gene:Galntl6 / 361142 RGDID:1564773 Length:601 Species:Rattus norvegicus


Alignment Length:650 Identity:266/650 - (40%)
Similarity:362/650 - (55%) Gaps:75/650 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KRYVKRLLRKVVLLLVVIV---TVSLVTTLVVERRMKNAAELTEQLDPNGDPITPVFRAANIHPT 66
            ||..||.|:..:|..|.::   .:.|.:....:..||:|.....|..|.|               
  Rat     2 KRKQKRFLQMTLLFTVALIFLPNIGLWSLYKDKHLMKSAEPAEHQTFPLG--------------- 51

  Fly    67 RKAPRPPFQDRNSVVDIPRSDKLQGFRLPEPKGERKDWHDYAAMEADRKRSGFGEHGVAVKIENP 131
                         :.|........|.|       |||||||.:::.|..|||.||||....:...
  Rat    52 -------------LGDGQFYSWTDGLR-------RKDWHDYVSIQKDALRSGKGEHGKPYPLTEE 96

  Fly   132 DEKQLEKEHYEMNGFNGLISDRISVNRSVPDLRLEACKTRKYLAKLPNISVIFIFFNEHFNTLLR 196
            |.   :...|..||||..:|:.|::.||:||:|...||.:.||.:|||.|:|..|.||.:.:|||
  Rat    97 DH---DDSAYRENGFNIFVSNNIALERSLPDIRHANCKHKMYLERLPNTSIIIPFHNEGWTSLLR 158

  Fly   197 SIYSVINRTPPELLKQIVLVDDGSEWDVLKQPLDDYVQQHFPHLVTIVRNPERQGLIGARIAGAK 261
            :|:|:|||||..|:.:|:||||.|:.:.||..|:||:.: || :|.|||..:|:|||..|:.||.
  Rat   159 TIHSIINRTPESLIAEIILVDDFSDREHLKDKLEDYMAR-FP-IVRIVRTKKREGLIRTRLLGAS 221

  Fly   262 VAVGQVMVFFDSHIEVNYNWLPPLIEPIAINPKISTCPMVDTISHEDFSYFSGNKDGARGGFDWK 326
            ||.|:|:.|.|||.|||.||||||:..||:|.|...|||:|.|.|..|.|.:...|..||.|||:
  Rat   222 VARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHSHFGYEAQAGDAMRGAFDWE 286

  Fly   327 MLYKQLPVLPE-DALDKSMPYRSPVMMGGLFAINTDFFWDLGGYDDQLDIWGGEQYELSFKIWMC 390
            |.||::|:.|| ...|.|.|:.||||.|||||::..:||:|||||..|:||||||||:|||:|||
  Rat   287 MYYKRIPIPPELQRADPSEPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMC 351

  Fly   391 GGMLLDVPCSRVAHIFRG--PMK-PRGNPRGHNFVAKNHKRVAEVWMDEYKQYVYKRDPKTYDNL 452
            ||.:.|||||||.||:|.  |.| |.|..     :|:|.|||||.||||:.:|:|:|.|: |.:|
  Rat   352 GGEMFDVPCSRVGHIYRKYVPYKVPSGTS-----LARNLKRVAETWMDEFAEYIYQRRPE-YRHL 410

  Fly   453 DAGDLTRQRGVRERLKCKSFHWFMTEVAPDFLVKFPPVEPPSYAAGIIQNVANPVYCLDNMGKST 517
            ..||::.|:.:|:|||||.|.|||..||.|....:|||||...|.|.|:|||..: |:|:...:.
  Rat   411 STGDISAQKELRKRLKCKDFKWFMAAVAWDVPKYYPPVEPLPAAWGEIRNVAANL-CVDSKHGAM 474

  Fly   518 EEAVGMFSC---ADNRT--HPQPNQF-WELSI--FRDLRMKGFDSVCLDV--HEGPPNATVWMWS 572
            ...:.:..|   ...||  |.|...| |...|  ...|..:.|   |||.  |..|    |.::.
  Rat   475 GTELRLDICVKDGSERTWSHEQLFTFGWREDIRPGEPLHTRKF---CLDAISHSSP----VTLYD 532

  Fly   573 CHSQGGNQFWYYDRQTQRLVHGENNKRCLEGFVENGIAKVVANSCENGNDRQRWEFGFVNHTMLD 637
            ||...|||.|.| |:.:.|.|..:|. |::  ......||....|:..::.|:|.|..:|.|:|:
  Rat   533 CHGMKGNQLWGY-REDRTLFHPVSNS-CMD--CNPAEKKVFMARCDPLSETQQWMFEHINMTVLE 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant4NP_001137779.1 BcsA 169..>403 CDD:224136 129/234 (55%)
pp-GalNAc-T 181..480 CDD:133004 161/302 (53%)
Ricin_B_lectin 496..626 CDD:279046 40/139 (29%)
RICIN 498..628 CDD:238092 40/139 (29%)
Galntl6NP_001129228.1 Glyco_tranf_2_3 140..365 CDD:290369 126/226 (56%)
pp-GalNAc-T 143..438 CDD:133004 161/302 (53%)
Ricin_B_lectin 454..582 CDD:279046 40/139 (29%)
RICIN 456..584 CDD:238092 40/139 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 159 1.000 Domainoid score I3987
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 515 1.000 Inparanoid score I1247
OMA 1 1.010 - - QHG48703
OrthoDB 1 1.010 - - D144590at33208
OrthoFinder 1 1.000 - - FOG0001284
OrthoInspector 1 1.000 - - mtm9134
orthoMCL 1 0.900 - - OOG6_104854
Panther 1 1.100 - - O PTHR11675
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1309
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.980

Return to query results.
Submit another query.