DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgant4 and gly-6

DIOPT Version :9

Sequence 1:NP_001137779.1 Gene:Pgant4 / 261610 FlyBaseID:FBgn0051956 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001022644.1 Gene:gly-6 / 175558 WormBaseID:WBGene00001631 Length:618 Species:Caenorhabditis elegans


Alignment Length:602 Identity:198/602 - (32%)
Similarity:298/602 - (49%) Gaps:87/602 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 TRKAPRPPFQDRNSVV------DIPRSDKLQGFRLPEPKGERKDWHDYAAMEADRKRSGFGEHGV 124
            |:||.:|..:....||      ::| .||.:.....|........||           .:||.|.
 Worm    51 TQKAIKPIARSNYHVVVGHYNGNLP-EDKKRNLTSEELNANLYAPHD-----------DWGEGGA 103

  Fly   125 AVKIENPDEKQLEKEHYEMNGFNGLISDRISVNRSVPDLRLEACKTRKYLAKLPNISVIFIFFNE 189
            .|....|::::|....:.:|.||.|:||.|||.||:|::|..:|:...|...||..|||.::.||
 Worm   104 GVSHLTPEQQKLADSTFAVNQFNLLVSDGISVRRSLPEIRKPSCRNMTYPDNLPTTSVIIVYHNE 168

  Fly   190 HFNTLLRSIYSVINRTPPELLKQIVLVDDGSEWDVLKQPLDDYVQQHFPHLVTIVRNPERQGLIG 254
            .::||||:::|||:|:|.||||:|:||||.|:.:.|:.|..|...:..|..:.|:|:.||.|||.
 Worm   169 AYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFLRYPTLDTTLKPLPTDIKIIRSKERVGLIR 233

  Fly   255 ARIAGAKVAVGQVMVFFDSHIEVNYNWLPPLIEPIAINPKISTCPMVDTISHEDFSYFSGNKDGA 319
            ||:.||:.|.|.|:.|.|||.|....||.||:..|.:|.|...||::|.|:...|.|..| .:..
 Worm   234 ARMMGAQEAQGDVLTFLDSHCECTKGWLEPLLTRIKLNRKAVPCPVIDIINDNTFQYQKG-IEMF 297

  Fly   320 RGGFDWKMLYK--QLP--VLPEDALDKSMPYRSPVMMGGLFAINTDFFWDLGGYDDQLDIWGGEQ 380
            ||||:|.:.::  .:|  :..:..||.:.|..||.|.||||:||.::|.:||.||..:||||||.
 Worm   298 RGGFNWNLQFRWYGMPTAMAKQHLLDPTGPIESPTMAGGLFSINRNYFEELGEYDPGMDIWGGEN 362

  Fly   381 YELSFKIWMCGGMLLDVPCSRVAHIFRGPMKPRGNPRGHNFVAK--------NHKRVAEVWMDEY 437
            .|:||:||.|||.:..:|||.|.|:||     :.:|  |:|..|        |..||||||||::
 Worm   363 LEMSFRIWQCGGRVEILPCSHVGHVFR-----KSSP--HDFPGKSSGKVLNTNLLRVAEVWMDDW 420

  Fly   438 KQYVYKRDPKTYDNLDAGDLTRQRGVRERLKCKSFHWFMTEVAPDFLVKFPPVEPPSYAAGIIQN 502
            |.|.||..|:.:....:.|::.:..:|::|.||||.|::..|..|..:..|              
 Worm   421 KHYFYKIAPQAHRMRSSIDVSERVELRKKLNCKSFKWYLQNVFQDHFLPTP-------------- 471

  Fly   503 VANPVYCLDNMGKSTEEA--------------VGMFSCADNRTHPQPNQFWELSIFRDLRMKGFD 553
                   ||..|:.|..:              :...|.||........|.|..:  .|.|::..:
 Worm   472 -------LDRFGRMTSSSNSSVCLAWTLRSSGIKTASTADCLKIFHKTQLWLYT--GDRRIRTDE 527

  Fly   554 SVCLDVHEGPPNATVWMWSCHSQGG--NQFWYYDRQTQRLVHGENNKR--CLEG---F--VENGI 609
            .:||.|.:.....:.|........|  .::|.:..:..|.   :|.|.  ||..   |  .::..
 Worm   528 HLCLSVVQLLHTTSDWKIQLKECAGFDTEYWDFKPKIGRF---QNRKTGLCLASPDIFDPTKDEF 589

  Fly   610 AKVVANSCENGNDRQRW 626
            ...:...|.:.||||.|
 Worm   590 NPPIVQKCRSSNDRQNW 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant4NP_001137779.1 BcsA 169..>403 CDD:224136 104/237 (44%)
pp-GalNAc-T 181..480 CDD:133004 131/310 (42%)
Ricin_B_lectin 496..626 CDD:279046 28/152 (18%)
RICIN 498..628 CDD:238092 29/152 (19%)
gly-6NP_001022644.1 WcaA 155..451 CDD:223539 127/303 (42%)
pp-GalNAc-T 160..463 CDD:133004 131/310 (42%)
Ricin_B_lectin 474..606 CDD:279046 26/136 (19%)
RICIN 476..608 CDD:238092 27/136 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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