DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant4 and galnt18b

DIOPT Version :10

Sequence 1:NP_722910.2 Gene:Pgant4 / 261610 FlyBaseID:FBgn0051956 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_003199061.1 Gene:galnt18b / 100310831 ZFINID:ZDB-GENE-091014-1 Length:609 Species:Danio rerio


Alignment Length:651 Identity:194/651 - (29%)
Similarity:316/651 - (48%) Gaps:115/651 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 TVSLVTTLVVERRMKNAAEL------TEQLDPNGDPITPVFRAANIHPTRKAPRPPFQ---DR-- 77
            |.:||:|.|:...|.|...|      |..:             ||::.....|.|..:   ||  
Zfish     7 TKTLVSTCVILSGMTNIVCLLYVGWVTNYI-------------ANVYIKVPVPVPAKKLEGDRKG 58

  Fly    78 NSVVDIPRSDKLQGF---RLPEP--KGERKDWHDYAAMEADRK---RSGFGEHGVAVKIENPDEK 134
            .::..|.|.|:|:..   .:.|.  ||:..        :.||.   .|.|...|..:   .|:.:
Zfish    59 ETLRIIERLDRLENVVNQHIQESPLKGDDN--------QVDRSFADSSLFNHWGQDL---GPESR 112

  Fly   135 QLEKEHYEMNGFNGLISDRISVNRSVPDLRLEACKTRKYLAKLPNISVIFIFFNEHFNTLLRSIY 199
            ::..:.::..|:||.:|||:|::|::||.|.:.||...|.:.||.:|::|||.||..:.:||||:
Zfish   113 RVALKMFQYYGYNGYLSDRLSMDRAIPDYRPDGCKNMSYPSNLPQVSIVFIFVNEALSVILRSIH 177

  Fly   200 SVINRTPPELLKQIVLVDDGSEWDVLKQPLDDYVQQ---HFPHLVTIVRNPERQGLIGARIAGAK 261
            ||:||||..|||:|:||||.|..|.||:.|.|:|::   ..|..:.:||:..::|||.:|::|.:
Zfish   178 SVMNRTPSHLLKEIILVDDNSNNDELKEKLQDFVKETNAKQPGFIKVVRHSRQEGLIRSRVSGWR 242

  Fly   262 VAVGQVMVFFDSHIEVNYNWLPPLIEPIAINPKISTCPMVDTISHEDFSY----FSGNKDGARGG 322
            .|...|:..||:|:|.|..|..|:::.|..:......|..|.|.::.|..    .|..      |
Zfish   243 AASAPVVALFDAHVEFNIGWAEPILQRIKEDRTRIISPSFDNIKYDTFEIEEYPLSAQ------G 301

  Fly   323 FDWKMLYKQL--PVLPEDALDKSMPYRSPVMMGGLFAINTDFFWDLGGYDDQLDIWGGEQYELSF 385
            |||::..:.|  |....:..:.:.|.|||.:: |.|.::..:|.::|..|:.::|:|||..||..
Zfish   302 FDWELWCRYLNPPKSWWNLNNSTAPIRSPALI-GCFVVDRLYFAEIGLLDEGMEIYGGENVELGV 365

  Fly   386 KIWMCGGMLLDVPCSRVAHIFRGPMKPRGNPRGHNFVAKNHKRVAEVWMDEYKQYVYK--RDPKT 448
            ::|.|||.:..:||:|:|||.|.......:...|  |.:|..|||||||||:|.:||.  ..|:.
Zfish   366 RVWQCGGSVEVLPCARIAHIERAHKPYTEDLTAH--VRRNALRVAEVWMDEFKSHVYMAWNIPQE 428

  Fly   449 YDNLDAGDLTRQRGVRERLKCKSFHWFMTEVAPDFLVKFPPVEPPSYAAGIIQNVANPVYCLDNM 513
            ...:|.||:..::.:|::|:||:|.|::..:.|:..:....|     |.|:::|......||| .
Zfish   429 DSGIDIGDIAERKALRKKLQCKTFRWYLVNIYPEMRMYTDTV-----AYGVLRNSLKTDLCLD-Q 487

  Fly   514 GKSTEEAVGMFSCADNRTHPQPNQFWELS--IFRDL---RMKGFDSVCLDVHEGPPN------AT 567
            |..|:....::.|  :...|| |.::..:  :|..:   .:...|:.||....|.|.      |.
Zfish   488 GPDTDNIPILYLC--HGMTPQ-NVYYTSTQQLFVGILSPTVDDDDNKCLVDVNGRPRLIECSYAV 549

  Fly   568 VWMWSCH---SQGGNQFWYYDRQTQRLVHGENNKRCLEGFVENGIAKVVANSCENGNDRQRWEFG 629
            ......|   :|||:            :....:||||| .|||             ||.   |||
Zfish   550 AKRMKLHWRFTQGGS------------IQNTKSKRCLE-LVEN-------------NDN---EFG 585

  Fly   630 F 630
            |
Zfish   586 F 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant4NP_722910.2 pp-GalNAc-T 181..480 CDD:133004 111/309 (36%)
beta-trefoil_Ricin_Pgant9-like 493..629 CDD:467340 34/149 (23%)
galnt18bXP_003199061.1 pp-GalNAc-T 159..460 CDD:133004 111/309 (36%)
beta-trefoil_Ricin-like 463..604 CDD:483949 38/162 (23%)

Return to query results.
Submit another query.