DRSC/TRiP Functional Genomics Resources

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Protein Alignment Coq4 and coq4

DIOPT Version :9

Sequence 1:NP_001246815.1 Gene:Coq4 / 261607 FlyBaseID:FBgn0052174 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_593130.1 Gene:coq4 / 2541625 PomBaseID:SPAC1687.12c Length:272 Species:Schizosaccharomyces pombe


Alignment Length:215 Identity:90/215 - (41%)
Similarity:138/215 - (64%) Gaps:2/215 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 IEISPFQRLFLGAGSSIAALLNP-RRHDMIACLGETTGED-ALWTILDTMQASEEGQRIMADKPR 112
            :.:||.||:||.|||:|..|..| |..|||:.||:.:|:. .|..:|:.|...:.|:.|:.||||
pombe    51 VPLSPLQRIFLVAGSAIMGLKAPWRGGDMISVLGDASGQPFFLHRLLNKMLVDKTGREILKDKPR 115

  Fly   113 IHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTV 177
            :.:.:::..:|.||||:|.|..||.::....|.||:|...||::||:.||:|.||||.||..|.:
pombe   116 MTSKSLNLPFLRTLPPNTLGKIYVDWIDKEHVGPDTRSPTRFVDDPEEAYVMQRYRESHDFYHAI 180

  Fly   178 LDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRTKPLMP 242
            .:||||:.||:|:||:|.:|.|||:....|:||.:||..:|...:.:.|:||::.||...|.|:.
pombe   181 CNMPTNIEGELAIKWLEFVNMGLPVGALSALFGPLRLNCEQASRFRRVYIPWSIRNGLNAKTLIN 245

  Fly   243 VYWEKRWEQNIHELRSELGI 262
            |||||....:|.::|..:.|
pombe   246 VYWEKELTNDIEDVRRRIRI 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Coq4NP_001246815.1 Coq4 54..265 CDD:282826 89/211 (42%)
coq4NP_593130.1 Coq4 55..269 CDD:282826 89/211 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 184 1.000 Domainoid score I782
eggNOG 1 0.900 - - E1_COG5031
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68641
Inparanoid 1 1.050 183 1.000 Inparanoid score I1102
OMA 1 1.010 - - QHG54901
OrthoFinder 1 1.000 - - FOG0004197
OrthoInspector 1 1.000 - - oto101219
orthoMCL 1 0.900 - - OOG6_103250
Panther 1 1.100 - - LDO PTHR12922
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R234
SonicParanoid 1 1.000 - - X2942
TreeFam 1 0.960 - -
1413.860

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