DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8176 and Synd

DIOPT Version :9

Sequence 1:NP_001097723.1 Gene:CG8176 / 261329 FlyBaseID:FBgn0037702 Length:1220 Species:Drosophila melanogaster
Sequence 2:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster


Alignment Length:541 Identity:102/541 - (18%)
Similarity:192/541 - (35%) Gaps:164/541 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NDYFWGEKNNGYDVLYHNMKFGLIASKELSEFLREKSNIEEQNSKMMSKLAHKAGTL------NS 64
            :|.||...|  |......::.|.....:|.:.::|:::||:..:|.:...:.|.|.|      ..
  Fly    14 SDSFWEPGN--YKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYG 76

  Fly    65 TFAPVWTILRTSAEKLSTLHLQMVQKLTELVKDVAKYADELHKKHKSVKEEESQTLECV------ 123
            |....|..:.|.:|::|.:|:::...|...|....|...:.:..|..::.:|.:.||.:      
  Fly    77 TTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQK 141

  Fly   124 -----------------QAIQTSTVAVQKLRDLYASKVQELEKLRKDNGSHKDAEKLESKLKKLQ 171
                             .|.:|...|..:.|:..|......::::|   .|...:|.:.:::|.:
  Fly   142 PWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKK---MHDRVQKTKDQVQKCR 203

  Fly   172 EEYK---ALLDKHNPIKNEFERRMTQTCKRFQEIEEVHLRQMKEFLSTYLEMLQNNHDMVGQVHS 233
            |:|:   |.:.|:|.:   :...||...::.|..|:..|:..||.|.              .|||
  Fly   204 EKYEQAIAEITKYNSV---YIEDMTSVFEKCQTFEKTRLQFFKEILF--------------NVHS 251

  Fly   234 DFKRQFVDMSVDKLLEQFVLNKYTGLEKPEMPELEYVALSSGSRLQQPQVSASASNSNSATSIQA 298
            ......| .|:.::.|:|   .:|.....:..:|::.:.:.|..:        |.|..|......
  Fly   252 CLDLTKV-QSLPQIYEEF---SHTINNADQQKDLKWWSNNHGINM--------AMNWPSFVEYTE 304

  Fly   299 ALRAGNAATTASGSAVSMDQRGDALAAISLGSGSAASGSIPFAEDPILGAMGSPRPTSPDMLAGA 363
            ..|                         .:..|:.:..::|.|  ||  .:.:.||.:.|:    
  Fly   305 EFR-------------------------DIAKGNKSKEALPAA--PI--TLINQRPVAEDV---- 336

  Fly   364 NASGIQSQPTGGATSTVKSLRSWFLPTAKQQPSAGAGNFGMAGSGSTNNTTTTTTASNNSNNLNT 428
                .|..|   .|:::|.                                .|:|.|:.|:..:.
  Fly   337 ----HQEYP---QTNSLKK--------------------------------NTSTLSSVSSRASV 362

  Fly   429 NNTTATTTTTTGTNNLTTNITKNSPNSEDTSNQDQTQQQPAEALTPTASATAIAAAS-------- 485
            .:..|||                  .|..|:::.:|....|.|.|.||:|||.:|||        
  Fly   363 KSEIATT------------------QSSVTTSEAKTSAAVAGAATATAAATAASAASNRNSSVTN 409

  Fly   486 APGKKQLNATTSEQQLSKSLN 506
            ..||...|....|::..:|.|
  Fly   410 GNGKVDANPFDEEEEWDESDN 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8176NP_001097723.1 F-BAR_FCHO 11..269 CDD:153332 55/289 (19%)
Apolipoprotein 52..214 CDD:279749 37/193 (19%)
AP_Syp1_like_MHD 928..1194 CDD:271171
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 55/280 (20%)
SH3_PACSIN 441..493 CDD:212777
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23065
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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