DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Or19b and Or1a

DIOPT Version :9

Sequence 1:NP_728315.1 Gene:Or19b / 260693 FlyBaseID:FBgn0062565 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_525029.2 Gene:Or1a / 30978 FlyBaseID:FBgn0029521 Length:392 Species:Drosophila melanogaster


Alignment Length:405 Identity:77/405 - (19%)
Similarity:145/405 - (35%) Gaps:63/405 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LVNHWR---IFRIMGIH-PPGKRTFWGRHYTAYS-MVWNVTFHICIWVSFSVNLLQSNSLETFCE 71
            |.|.|.   .|..||:. .|.|:....|....|. |....:|.:|...:|   ::|:.:....|.
  Fly     9 LGNLWTQRFTFARMGLDLQPDKKGNVLRSPLLYCIMCLTTSFELCTVCAF---MVQNRNQIVLCS 70

  Fly    72 SLCVTMPHTLYMLKLINVRRMRGEMISSHWLLRLLDKRLGCADERQIIMAGIE------RAEFIF 130
            .   .:.|.|.|:.  ::.:|...:..||.|:.|:.:......|..::  |.|      |.:.:.
  Fly    71 E---ALMHGLQMVS--SLLKMAIFLAKSHDLVDLIQQIQSPFTEEDLV--GTEWRSQNQRGQLMA 128

  Fly   131 RTIFRGLACT--------VVLGIIYISASSE--PTLMYPTWIPWNWKDSTS--AYLATAMLHTTA 183
            ...|...|.|        |.|.::...::.|  |...:...:|:   |.|.  .|.....|....
  Fly   129 AIYFMMCAGTSVSFLLMPVALTMLKYHSTGEFAPVSSFRVLLPY---DVTQPHVYAMDCCLMVFV 190

  Fly   184 LMANATLVLNLSSYPGTYLILVSVHTKALALRVSKLGYGAPLPAV----RMQAILVGYIHDHQII 244
            |.........:.:..|...:.||:..:.|..::.:      :|:.    |....|.|...:|..:
  Fly   191 LSFFCCSTTGVDTLYGWCALGVSLQYRRLGQQLKR------IPSCFNPSRSDFGLSGIFVEHARL 249

  Fly   245 LRLFKSLERSLSMTCFLQFFSTACAQCT-ICYFLL------FGNVGIMRFMNMLFLLVILTTETL 302
            |::.:....|.....|::........|: ||.:::      |..:|        |..:::||:..
  Fly   250 LKIVQHFNYSFMEIAFVEVVIICGLYCSVICQYIMPHTNQNFAFLG--------FFSLVVTTQLC 306

  Fly   303 LLCYTAELPCKEGESLLTAVYS-CNWLSQSVNFRRLLLLMLARCQIPMILVSGVIVPISMKTFTV 366
            :..:.||....|.|.....:|. ..|.:.....|:|.|..:.|.|...:| ......:.......
  Fly   307 IYLFGAEQVRLEAERFSRLLYEVIPWQNLPPKHRKLFLFPIERAQRETVL-GAYFFELGRPLLVW 370

  Fly   367 MIKGAYTMLTLLNEI 381
            :.:.|.:..||:|.:
  Fly   371 IFRTAGSFTTLMNAL 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Or19bNP_728315.1 7tm_6 65..372 CDD:251636 58/336 (17%)
Or1aNP_525029.2 7tm_6 79..376 CDD:251636 55/318 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45465638
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR21137
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.