DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and EMB1586

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_001322468.1 Gene:EMB1586 / 837833 AraportID:AT1G12770 Length:551 Species:Arabidopsis thaliana


Alignment Length:428 Identity:120/428 - (28%)
Similarity:188/428 - (43%) Gaps:80/428 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 NIPVKVTGSDVPQPI-------QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMA 287
            |..:||.....|..|       :.|....|.|.::|::.:.|:.:||.:|..::|.|..|.|.:.
plant    88 NDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVI 152

  Fly   288 CAQTGSGKTAAFLLPILSKL-----------LEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 341
            .:.||||||.|:||||||::           .|:....|:   |.:||:|:|||.:||..|..|.
plant   153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEI---QAMIVAPSRELGMQIVREVEKL 214

  Fly   342 AFESYLKIGIVY--------GGTSFRHQNECITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVV 397
                   :|.|:        ||.:...|.|.:.:. ..:|:.||||:.:......:.....||:|
plant   215 -------LGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLV 272

  Fly   398 LDEADRMLDMGFSEDMRRIMTH------------VTMRPEHQTLMFSATFPEEIQRMAGEFLKNY 450
            |||.|.:|...|.||:.||:.|            |..|...||::.|||.|..:.|.|..:....
plant   273 LDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEP 337

  Fly   451 VFVAIGIV-------------------GGACSDVKQTI----------YEVNKYAKRSKLIE--I 484
            |.|....|                   ..|...::.||          |.::|:..:...:.  :
plant   338 VLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCV 402

  Fly   485 LSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVA 549
            .:..|...|.|:...|....:...|..:...:..:|||..:..|...|:.||||.:|||:...::
plant   403 HALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELS 467

  Fly   550 SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 587
            :||||:.....|:|.::|:....|.||.|||||:|..|
plant   468 ARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKG 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 74/238 (31%)
DEXDc 260..467 CDD:214692 73/257 (28%)
Helicase_C 475..584 CDD:278689 32/110 (29%)
EMB1586NP_001322468.1 P-loop_NTPase 112..340 CDD:304359 74/237 (31%)
DEXDc 125..349 CDD:214692 72/233 (31%)
HELICc 384..510 CDD:238034 36/122 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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