DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and AT5G63120

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_974985.1 Gene:AT5G63120 / 836432 AraportID:AT5G63120 Length:591 Species:Arabidopsis thaliana


Alignment Length:639 Identity:225/639 - (35%)
Similarity:316/639 - (49%) Gaps:142/639 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 YQGGNRDVFGRIGGGRGGG---AGGYRGGNRDGGGFHGGRREGERDFRGGEGGFRGGQGGSRGGQ 111
            |.||        |||.|..   ||...|.||            ...|:...|||..|:||.|||.
plant    39 YTGG--------GGGYGPSPVMAGDNSGYNR------------YPSFQPPSGGFSVGRGGGRGGY 83

  Fly   112 G--GSRGGQGGFRGGEGGFRGRLYENEDGDERRGRLDREERGGERRGRLDREERGGERGERGDGG 174
            |  |.|.|.|.:.||.|                                    |||         
plant    84 GQYGDRNGGGNWGGGGG------------------------------------RGG--------- 103

  Fly   175 FARRRRNEDDINNNNNIVEDVERKREFYIPPEPSNDAIEIFSSGIASGIHFSK--YNNIP----- 232
                                 ..|||.        |::.:......:.:||.|  |...|     
plant   104 ---------------------SSKREL--------DSVSLPKQNFGNLVHFEKNFYVESPTVQAM 139

  Fly   233 -------------VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRD 284
                         :.|.|.|||:|::.|..|:..|.|::.:.|.|:..|||||....|:...|||
plant   140 TEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRD 204

  Fly   285 LMACAQTGSGKTAAFLLPILSKLLEDPHELELGR---PQVVIVSPTRELAIQIFNEARKFAFESY 346
            |:..|:||||||.|:|||.|..:...|   .||:   |.|:|::||||||:||..|:|||...|.
plant   205 LIGIAETGSGKTLAYLLPALVHVSAQP---RLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSG 266

  Fly   347 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSE 411
            ::...:|||.....|...:.||..:||||||||:|.::......:...::|||||||||||||..
plant   267 VRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEP 331

  Fly   412 DMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKY 475
            .:|:|::.:  ||:.|||::|||:|.|::.:|.:||::.....||... .|...:.|.|..|...
plant   332 QIRKIVSQI--RPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTP 394

  Fly   476 AKRSKLIEILSEQADGT--IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG 538
            .|.::|:.:|.:..||:  ::|||||||.|.:...|....:|..:||||:.||:|::.|.:||:|
plant   395 EKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSG 459

  Fly   539 SMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAA 603
            ...::.||.||:||||:|:||.|:|||.|:.::||:||||||||.|..|.|.:||..:..: .|.
plant   460 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAK-FAR 523

  Fly   604 DLVKILEGSGQTVPDFL----RTCGAGGDGGYSNQNF---GGVDVRGRGNYVGD 650
            :|||||:.:||.||..|    |:.|:|..|....:||   ||    |||...||
plant   524 ELVKILQEAGQVVPPTLSALVRSSGSGYGGSGGGRNFRPRGG----GRGGGFGD 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 90/209 (43%)
DEXDc 260..467 CDD:214692 89/210 (42%)
Helicase_C 475..584 CDD:278689 52/110 (47%)
AT5G63120NP_974985.1 PTZ00110 121..543 CDD:240273 175/427 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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