DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and AT3G58570

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_191416.1 Gene:AT3G58570 / 825026 AraportID:AT3G58570 Length:646 Species:Arabidopsis thaliana


Alignment Length:622 Identity:244/622 - (39%)
Similarity:339/622 - (54%) Gaps:100/622 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 GGGAGGYRGGNRDGGGFHGGRREGERDF---------RGGEGGFRGGQGGSRGGQGGSRGGQGGF 121
            |||.|..|....:....|...|....:|         |||.||...|.||...|.||...|.||.
plant    18 GGGWGYSRPSRTNYVPPHLRSRTPSSEFVAPSPGNNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82

  Fly   122 RGGEGGFRGRLYENEDGDERRGRLDREERGGERRGRLDREERGGERGERGDGGFARRRRNEDDIN 186
            .|..||:..|                                        .||:.||....:...
plant    83 GGPVGGWNAR----------------------------------------SGGWDRRDTETNPFG 107

  Fly   187 NNNNIVEDVERKREFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSAD 251
            |:.|....|.         |..|..           |:|..|.:||::.:|.:||.|:..|...|
plant   108 NDGNADPAVN---------EQENTV-----------INFEAYEDIPIETSGDNVPPPVNTFAEID 152

  Fly   252 LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL 316
            |.:.:..|:.:..|..|||:|:.:||::::||||||||||||||||||..||:|.:::|.| :|.
plant   153 LGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQH-IER 216

  Fly   317 GR------PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 375
            .|      |..||:|||||||.||.:|||||::::.:|:.:.||||....|...:.||..:::||
plant   217 PRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVAT 281

  Fly   376 PGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE--HQTLMFSATFPEE 438
            ||||.|.::|..::.:..||:.||||||||||||...:|:|:..:.|.|.  .||::||||||.|
plant   282 PGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPRE 346

  Fly   439 IQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG--------TIVF 495
            |||:|.:||.||:|:|:|.||.:...:.|.:..|:...|||.|:::|..|.:.        |:||
plant   347 IQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVF 411

  Fly   496 VETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKH 560
            ||||:|||.|.::|....||.|:|||||.|.:||.|||.||.|...:|:||.||:|||||.::.|
plant   412 VETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAH 476

  Fly   561 VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL----- 620
            |:|:|:|:.|||||||||||||.||:|.||:||: :.:..:|..|.::::.:.|.|||:|     
plant   477 VVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFN-DNNTTMAKPLAELMQEANQEVPDWLTRYAS 540

  Fly   621 RTCGAGGDGGYSNQNFGGVDVR--------GRGNYVG 649
            |....||....|...|||.|.|        |..:|.|
plant   541 RASFGGGKNRRSGGRFGGRDFRRESFSRGGGGADYYG 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 105/214 (49%)
DEXDc 260..467 CDD:214692 105/214 (49%)
Helicase_C 475..584 CDD:278689 63/116 (54%)
AT3G58570NP_191416.1 DEADc_DDX3_DDX4 147..367 CDD:350725 107/220 (49%)
SF2_C_DEAD 373..509 CDD:350174 70/135 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 51 1.000 Domainoid score I4326
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000634
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100461
Panther 1 1.100 - - O PTHR47958
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.920

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