DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and AT3G58510

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_001030884.1 Gene:AT3G58510 / 825020 AraportID:AT3G58510 Length:612 Species:Arabidopsis thaliana


Alignment Length:667 Identity:254/667 - (38%)
Similarity:352/667 - (52%) Gaps:142/667 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 WSDDEDTAKSFSGE---------------------AEGDGVGGSGGEGGGYQGGNRDVFGRIGGG 64
            |:|..|:.|:.|..                     .:.|..|     .||...|:|......|||
plant     5 WADVADSEKAVSQSKPPYVPPHLRNRPSEPVAAPLPQNDHAG-----YGGQPAGSRWAPPSSGGG 64

  Fly    65 RGGGAGGYRG-GNRDGGGFHGGRREGERDFRGGEGGFRGGQGGSRGGQGGSRGGQGGFRGGEGGF 128
             |...||||. |.|.|.|:                           |.||..||.||:....||:
plant    65 -GASGGGYRNDGGRTGYGY---------------------------GAGGGGGGGGGWNNRSGGW 101

  Fly   129 RGRLYENEDGDERRGRLDREERGGERRGRLDREERGGERGERGDGGFARRRRNEDDINNNNNIVE 193
                                          ||.||  |....||                     
plant   102 ------------------------------DRRER--EVNPFGD--------------------- 113

  Fly   194 DVERKREFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIID 258
            |.|.        ||      :|:....:||:|..|.:|||:.:|.|||.|:..|...||.|.:..
plant   114 DAEL--------EP------VFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNL 164

  Fly   259 NVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGR----- 318
            |:.:..|..|||:|:.:||::.:.|||||||||||||||||..||:|.:::|.| :|..|     
plant   165 NIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQH-VERPRGSRAV 228

  Fly   319 -PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDF 382
             |..||:|||||||.||.:||:||::::.:|:.:.||||....|...:.|||.:::||||||.|.
plant   229 YPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL 293

  Fly   383 VDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE--HQTLMFSATFPEEIQRMAGE 445
            ::|..::.:..||:.||||||||||||...:|:|:..:.|.|.  .||::||||||.:|||:|.:
plant   294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAAD 358

  Fly   446 FLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG------TIVFVETKRGADF 504
            |:.||:|:|:|.||.:...:.|.:..|.:..|||.|:::|..|.:.      |:||||||||||.
plant   359 FMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADT 423

  Fly   505 LASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSK 569
            |.::|...|||.|||||||.|.:||.|||.||.|...:|:||.||:|||||.::.||:|:|:|:.
plant   424 LENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPND 488

  Fly   570 IDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTCGA----GGDGG 630
            |||||||||||||.|.:|.||:||: |.:..:|..|.::::.:.|.||::|....:    ||...
plant   489 IDDYVHRIGRTGRAGKSGIATAFFN-ENNAQLARSLAELMQEANQEVPEWLTRYASRASFGGGKK 552

  Fly   631 YSNQNFGGVDVRGRGNY 647
            .|...|||.|.|..|:|
plant   553 RSGGRFGGRDFRREGSY 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 103/214 (48%)
DEXDc 260..467 CDD:214692 102/214 (48%)
Helicase_C 475..584 CDD:278689 66/114 (58%)
AT3G58510NP_001030884.1 DEADc_DDX3_DDX4 152..372 CDD:350725 105/220 (48%)
SF2_C_DEAD 378..512 CDD:350174 72/133 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 51 1.000 Domainoid score I4326
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000634
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100461
Panther 1 1.100 - - O PTHR47958
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.920

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