DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and AT2G40700

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_181602.2 Gene:AT2G40700 / 818665 AraportID:AT2G40700 Length:610 Species:Arabidopsis thaliana


Alignment Length:457 Identity:131/457 - (28%)
Similarity:212/457 - (46%) Gaps:97/457 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 FTSADLRDIIIDNV-NKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 310
            |:|..|...:.|.: .:.|::.||.:|..:||||.||||::..|.||:|||.|:|.|::      
plant    32 FSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI------ 90

  Fly   311 PHELELGRPQV--------VIVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNECIT 366
             |.|:...|:|        :::.|||||.:|::....|.... .::..|.|.||.....:...:.
plant    91 -HHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLR 154

  Fly   367 RGCHVVIATPGRLLDFVDRT--FITFEDTRFVVLDEADRMLDMGFSEDMRRIM------------ 417
            :|..::|||||||||.:..|  |: .::.|:|:.||||.:|::|:.:::.:|:            
plant   155 KGISILIATPGRLLDHLKNTASFV-HKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGE 218

  Fly   418 --THVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVA---------IGIVGGAC--SDVKQTI 469
              ..|....:.|.|:.|||..:::..:|...|.:.|.:.         :.|...|.  ||.:..:
plant   219 EDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMV 283

  Fly   470 YEVNKYAK---------------------RSKLIEILS--------EQADGTIVFVETKRGADFL 505
            ..|||.|.                     .::|:.:||        |.:...:||..|:...||.
plant   284 IHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFH 348

  Fly   506 ASFLSEKEFPTTS------------------IHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 552
            .|.|||.::|..|                  :||...|..|..|...||.....||::|.||:||
plant   349 YSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARG 413

  Fly   553 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 617
            ||...::.:|.||.|.:..:||||:|||.|:|..|.|..|..|     |..|.:|.|:..|.::.
plant   414 LDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQP-----IEIDYLKELKKHGASLT 473

  Fly   618 DF 619
            ::
plant   474 EY 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 70/232 (30%)
DEXDc 260..467 CDD:214692 70/243 (29%)
Helicase_C 475..584 CDD:278689 44/155 (28%)
AT2G40700NP_181602.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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