DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and ddx28

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_001070800.1 Gene:ddx28 / 768189 ZFINID:ZDB-GENE-061013-64 Length:558 Species:Danio rerio


Alignment Length:386 Identity:116/386 - (30%)
Similarity:189/386 - (48%) Gaps:48/386 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP- 319
            :::.:.:.....||.:|..:||.|..||:::..|:||||||..:||||:.:|.||   |..|.. 
Zfish   162 LVETLQRQNIIHPTTVQLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQED---LLAGSER 223

  Fly   320 --QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRG-CHVVIATPGRLLD 381
              :.|::.|:||||.|:.:.||..:....|.:.:|.||...........|| ..::::|||.||.
Zfish   224 SIRAVVIVPSRELAEQVNSVARSVSERFGLVVKVVGGGRGVGTIKAAFARGQPDILVSTPGALLK 288

  Fly   382 FVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH----------VTMRPEHQTLMFSATFP 436
            .:.:.||:..:..|:|:||||.|.|..|:..:.:|::|          :.:..:.|.::..||||
Zfish   289 ALWKRFISLSELYFLVIDEADTMFDDSFAGMLEKILSHTQVASRLSETIGLARKAQLVVVGATFP 353

  Fly   437 EEIQRMAGEFLKNYVFVA-IGIVGG-----ACSDVKQT---------IYEVNKYAKRSKLIEILS 486
            ..:    |:.|.....:| |..|..     ....:|||         |.|:::..||::      
Zfish   354 GGV----GDVLSKATDLASISTVKSRMLHHLMPHIKQTFLRVKGADKILELHQALKRAE------ 408

  Fly   487 EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR 551
            ::..|.:||..:....::|...|.|.......:.|:...:.||...|||:.|...||:.|.:|||
Zfish   409 QEQKGVLVFCNSASTVNWLGYSLEEMGVGHMRLQGEMPAAMREGVFRDFQRGKTNVLVCTDIASR 473

  Fly   552 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNN--GRATSFFDPEKDRAIAADLVKILE 610
            |||.:.:..::|||.|....||:||.||.||.|.:  |...||.....|    .:||:.:|
Zfish   474 GLDTQRVGLIVNYDFPESQTDYIHRAGRVGRAGGSEGGEVLSFVTQPWD----VELVQKIE 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 64/211 (30%)
DEXDc 260..467 CDD:214692 67/226 (30%)
Helicase_C 475..584 CDD:278689 36/108 (33%)
ddx28NP_001070800.1 SrmB 137..556 CDD:223587 116/386 (30%)
P-loop_NTPase 153..362 CDD:304359 64/206 (31%)
Helicase_C 395..506 CDD:278689 38/116 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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