DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and ddx3xa

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:XP_021334401.1 Gene:ddx3xa / 566947 ZFINID:ZDB-GENE-030131-1565 Length:841 Species:Danio rerio


Alignment Length:697 Identity:282/697 - (40%)
Similarity:391/697 - (56%) Gaps:119/697 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 GNRDVFGRIGGGRGGGAGGYRGGNRDG--GGFHGGRREGERDF--------RGGEGGFRGGQGGS 107
            ||.|....|.......:.|:.|...:|  .|:|..|..|..:|        |||.|||||.:.|:
Zfish   166 GNEDTASVISWADRCDSPGWDGSRTNGFVNGYHDSRMNGTANFARGPLRNDRGGRGGFRGNRNGA 230

  Fly   108 RGGQGGSRGGQGGFRGGEGGFRGRLYENEDG-DERRGRLDR------EERGGERRGRLDREERGG 165
            ...|.....|.|.:...:||:...:  |.|. ....||.||      .:||...|||.   ||||
Zfish   231 SFNQPVHNAGYGTYENKDGGWNSVV--NRDAYASFGGRSDRGKSAFFNDRGASSRGRY---ERGG 290

  Fly   166 ERGERGDGGFARRRRNEDDINNNNNIVEDVERKREFYIPPEPSNDAI--EIFSSGIASGIHFSKY 228
            ..|  |.||             |:..||: .|..|.:..|.|.|:.:  |:||:. .:||:|.||
Zfish   291 FGG--GTGG-------------NSRWVEE-SRDEEDWSKPMPPNERLEHELFSAS-NTGINFEKY 338

  Fly   229 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGS 293
            ::|||:.||::.|..|:.|...|:.:||:.|:..|.|..|||:||.:||:|.:.|||||||||||
Zfish   339 DDIPVEATGTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGS 403

  Fly   294 GKTAAFLLPILSKLL-EDPHEL----------ELGR-------PQVVIVSPTRELAIQIFNEARK 340
            |||||||||:||::. |.|.|.          |.|:       |..::::||||||:||::||||
Zfish   404 GKTAAFLLPVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARK 468

  Fly   341 FAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRML 405
            ||:.|.::..:||||.....|...:.||||:::||||||:|.::|..|..:..:::|||||||||
Zfish   469 FAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRML 533

  Fly   406 DMGFSEDMRRIMTHVTMRPE--HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQT 468
            ||||...:|||:...||.|:  .||:|||||||:|||.:|.:||:.|:|:|:|.||....::.|.
Zfish   534 DMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQK 598

  Fly   469 IYEVNKYAKRSKLIEILSEQADG----TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 529
            :..|.:..|||.|:::|:  |.|    |:||||||:|||.|..||..:.:..|||||||.|..||
Zfish   599 VVWVEENDKRSFLLDLLN--ATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDRE 661

  Fly   530 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD 594
            :||..|::|...:::||:||:|||||.|:|||||:|:||.|::|||||||||||||.|.||||::
Zfish   662 EALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYN 726

  Fly   595 PEKDRAIAADLVKILEGSGQTVPDFL--------------------------------------- 620
             :|:..|..||:.||..:.|.||.:|                                       
Zfish   727 -DKNSNITKDLLDILVEAKQEVPSWLENLAYEHQHKSTNRGRPKRFSGGFGARDYRQMPGGGNTF 790

  Fly   621 ------RTCGAGGDGGYSNQ-----NFGGVDVRGR-GNYVGDATNVE 655
                  .|.|.||:.|:...     :|||....|. |||.|:.|.|:
Zfish   791 GNRGARNTGGHGGNRGFGGNKGGFGSFGGDSYGGTYGNYGGNYTQVD 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 112/226 (50%)
DEXDc 260..467 CDD:214692 111/226 (49%)
Helicase_C 475..584 CDD:278689 63/112 (56%)
ddx3xaXP_021334401.1 SrmB 331..779 CDD:223587 211/450 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000634
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100461
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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