DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and CG9630

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_649777.1 Gene:CG9630 / 40974 FlyBaseID:FBgn0037561 Length:613 Species:Drosophila melanogaster


Alignment Length:424 Identity:130/424 - (30%)
Similarity:199/424 - (46%) Gaps:55/424 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL 316
            |.|.::..|...|::..||:|..:||::.:.:|:.|.|.||||||.|||:|:|..|.....|...
  Fly    14 LSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETPW 78

  Fly   317 GRPQV--VIVSPTRELAIQIFNEARKFAFE---SYLKIGIVYGGTS-------FRHQNECITRGC 369
            |..::  :::|||||||.||.....:|...   .:|...::.||.|       .|.:..||    
  Fly    79 GPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCI---- 139

  Fly   370 HVVIATPGRLLDFVDR------TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQT 428
              ::.|||||.|...|      .....:...|:|||||||:||:||...:..|:.::..  :.:|
  Fly   140 --LVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPR--QRRT 200

  Fly   429 LMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVK-QTIYE-VNKYAKRSKLIEILSEQA-- 489
            .:||||...|:..:....|:|.|.|::.......:..: |..|. |....|...|:|.||..|  
  Fly   201 GLFSATQTTEVTDLIRAGLRNPVLVSVKEKAS
VNTPARLQNFYRIVEPELKFVALLEFLSSPATV 265

  Fly   490 -DGTIVFVET----KRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVA 549
             ...:||..|    :..|:.|...|.::  ....||| :::::|...:..|:|....||:.|.|.
  Fly   266 IGKVMVFFPTCACVEYWAEALPPLLPKR--TVLGIHG-KMKNKRANVVEKFRNTPQAVLLCTDVL 327

  Fly   550 SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI-------AADLVK 607
            :||||:..|:.|:.:|.||....:|||:|||.|.||.|.|..|..|.:|..:       ..:|.|
  Fly   328 ARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFLLPSEDAYVHFLKINQKVELTK 392

  Fly   608 ILEGSGQ----------TVPDFLRTCGAGGDGGY 631
            :|....:          .|.|.|....|...|.|
  Fly   393 LLTEEAEDADREKKKLPAVLDQLHRLQAADKGVY 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 72/219 (33%)
DEXDc 260..467 CDD:214692 71/225 (32%)
Helicase_C 475..584 CDD:278689 38/115 (33%)
CG9630NP_649777.1 DEADc 6..226 CDD:238167 72/219 (33%)
DEXDc 22..232 CDD:214692 71/217 (33%)
HELICc 239..370 CDD:238034 45/133 (34%)
DUF4217 411..470 CDD:290667 6/16 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451597
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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