DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vas and Ddx1

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_524212.2 Gene:Ddx1 / 40457 FlyBaseID:FBgn0015075 Length:727 Species:Drosophila melanogaster


Alignment Length:596 Identity:147/596 - (24%)
Similarity:224/596 - (37%) Gaps:135/596 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 RDFRGGEGGFRGGQGGS----------RGG-----QGGSRGGQGGFRGGEG-----GFRGR---L 132
            ||...|:.|..|..||:          ||.     ..|.|.....|:...|     |.||:   .
  Fly    69 RDLEEGKAGKGGAIGGAVTPWTMSFFDRGNALAVTPDGLRCQSREFKEWHGCRATTGVRGKGKFY 133

  Fly   133 YENEDGDERRGRLDREERGGERRGRLDREERGGERGERGDGGFARRRRNE--DDINNNNNIVEDV 195
            :|....||...|:.    ...::..||   .|..|...|.||..::..|.  ||........:.:
  Fly   134 FEATVTDEGLCRVG----WSTQQANLD---LGTCRMGFGFGGTGKKSNNRQFDDYGEAFGKADVI 191

  Fly   196 ERKREFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNV 260
            ....:.      .|..:....:|...|:.|...:|:     ..:...|.....:|:::    .|.
  Fly   192 GCLLDL------KNQEVSFTKNGQNLGVAFRLPDNL-----AKETFYPAVVLKNAEMQ----FNF 241

  Fly   261 NKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL-GRPQVVIV 324
            .|:.:|            .:.|...:...|.|...:.|  .||.......|..... ..||.:|:
  Fly   242 GKTDFK------------YAPGNGFVGACQAGPEHSKA--NPITGPAAGAPSAKPAPNAPQAIIM 292

  Fly   325 SPTRELAIQIFNEARKFAF---ESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 386
            .|:||||.|.:|:..||.:   ...::..::.||.....|...:.:|.|:|:.|||||.:.::..
  Fly   293 EPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRLEEMINSG 357

  Fly   387 FITFEDTRFVVLDEADRMLDMGFSE--------------DMRRIMTHVTMRPEHQTLMFSATFPE 437
            .:.....||.||||||.:|..|::|              |.||:          |.::.|||...
  Fly   358 LVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRL----------QMVVCSATLHA 412

  Fly   438 -EIQRMAGEFLKNYVFV--------------------------------AIGIVGGACSD----- 464
             |:::||...:....:|                                .||..|....|     
  Fly   413 FEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIGTDGVHDRDNVHPG 477

  Fly   465 --VKQTIYEVNKYAKRSKLIEILSE-QADGTIVFVETKRGADFLASFLSE---KEFPTTSIHGDR 523
              .|:|:.:..|..|....:..:.: ..|..|:|..||:..|.|..||.:   |.:....:||||
  Fly   478 NHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFLRQRGGKHYSCVCLHGDR 542

  Fly   524 LQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGR 588
            ...:|::.|..||...:|.||.|.||:|||||..:..:||..:|....:|||||||.||....|.
  Fly   543 KPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGL 607

  Fly   589 ATSFFD--PEK 597
            |.|...  |||
  Fly   608 AISLVATVPEK 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 56/257 (22%)
DEXDc 260..467 CDD:214692 58/264 (22%)
Helicase_C 475..584 CDD:278689 42/112 (38%)
Ddx1NP_524212.2 P-loop_NTPase 4..>62 CDD:304359
SPRY_DDX1 91..242 CDD:293933 31/172 (18%)
SrmB 279..>612 CDD:223587 97/342 (28%)
P-loop_NTPase <280..426 CDD:304359 44/155 (28%)
Helicase_C 492..602 CDD:278689 41/109 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451608
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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