DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and Dbp73D

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_476833.1 Gene:Dbp73D / 39871 FlyBaseID:FBgn0004556 Length:687 Species:Drosophila melanogaster


Alignment Length:584 Identity:136/584 - (23%)
Similarity:238/584 - (40%) Gaps:142/584 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 REERGGERGERGDGGF--------ARRRRNEDDI--------NNNNNIVEDVERKREFYIPPE-- 206
            :|::.|.:|...:...        |:|:|..:.|        ....:.|::.|.|.|....||  
  Fly    14 KEQKDGAQGTNNEDEILQKLLKKAAKRKRKHEAIEVVETPILEKETSDVKESESKEEQVEEPEKP 78

  Fly   207 ---------PSNDAIEIFSSGIASG------IHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDII 256
                     |||: .::.....::.      :....:...|..:.|..: ||.:...:::..| .
  Fly    79 LEVVQEEDVPSNE-FQVLGGDDSAAKKKKVQMQLPNWLAHPTIIEGGSL-QPEEEVPASEAID-Q 140

  Fly   257 IDNVNK------SGYKIPT--PIQKCSIPVISSG---------RDLMACAQTGSGKTAAFLLPIL 304
            :|.:.|      ...||..  |:||..||.|...         ||:...|.||||||.||.:||:
  Fly   141 LDYLEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIV 205

  Fly   305 SKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT--- 366
             :||....:.::   :.::|.|..|||:|::....:...::.|::.::........:.|.:.   
  Fly   206 -QLLSQRVDCKV---RALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQY 266

  Fly   367 RG-----CHVVIATPGRLLDFVDRT-FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV----- 420
            :|     ..:|:.|||||:|.:..| ....:..:|:|:|||||::|..|...:..:.:||     
  Fly   267 KGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTD 331

  Fly   421 -----TMRP------------EHQTLMFSATF---PEEIQRMAGEFLKNYVFVAI---------- 455
                 |..|            :...|:||||.   ||::|.:  ...:..:|..:          
  Fly   332 QLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDL--RLFQPRLFATVLTMPVLKDAT 394

  Fly   456 --GIVGGACSDVKQTIYEVNKYAKRSKLIE---ILSEQADGTIVF--VETKRGADFLASFLSEKE 513
              |....|.:|..|.   |.:|...::|.|   :...:.....||  ||..:...||. |.:..:
  Fly   395 EEGADTEALTDPGQF---VGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLC-FTNSSD 455

  Fly   514 FPT-----------------TSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHV 561
            ..|                 :.:.|:.....|.:.||||..|.:..||.:...:||:|:.::..|
  Fly   456 QATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVV 520

  Fly   562 INYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL----EGSGQTV---PD 618
            ::|:.|..|..|:||:|||.|.|..|.|.:.. .|:|..:   ..|||    :|.|:.:   ||
  Fly   521 LSYETPRHITTYIHRVGRTARAGRKGTAVTVL-TEQDMTL---FKKILSDANKGLGEEIHVSPD 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 65/257 (25%)
DEXDc 260..467 CDD:214692 66/269 (25%)
Helicase_C 475..584 CDD:278689 34/130 (26%)
Dbp73DNP_476833.1 PRK11192 149..629 CDD:236877 113/446 (25%)
DEAD 162..370 CDD:278688 58/211 (27%)
HELICc 418..551 CDD:238034 36/133 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451609
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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