DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and ddx3x

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:XP_012812110.1 Gene:ddx3x / 394804 XenbaseID:XB-GENE-999731 Length:723 Species:Xenopus tropicalis


Alignment Length:722 Identity:289/722 - (40%)
Similarity:385/722 - (53%) Gaps:142/722 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PIVDTRGARGGDWSDDEDTAKSFSGEAEGDGVGGSGGEGGGY-QGGNRDVFGRIGGGRGGGAGGY 72
            |.||.....|..||...|        |..|    :|..|.|| .|.|.|...|:.|....|.|. 
 Frog    58 PAVDVYKGYGDWWSQRTD--------ANWD----AGRGGNGYVNGTNDDRDSRMNGYDRSGYGN- 109

  Fly    73 RGGNRDGGGFHGGRREGERDFRGGEGGFRGGQGGSRGGQGGSRGGQGGF--RGGEGGFRGRLYEN 135
            ||..|...||:      :|:..|...| |.....|..|..|.||....|  |||.|..|      
 Frog   110 RGSGRTDRGFY------DRENSGWNSG-RDKDAYSSFGSRGERGKPSLFNDRGGSGSRR------ 161

  Fly   136 EDGDERR-----GRLDREERGGERRGRLDREERGGERGERGDGGFARRRRNEDDINNNNNIVEDV 195
              .|:||     |..:|.:|.|  .||.|          ||:..::..|.:|||           
 Frog   162 --PDDRRPDGYDGMANRGDRSG--FGRFD----------RGNSRWSDERNDEDD----------- 201

  Fly   196 ERKREFYIPPEPSNDAI--EIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIID 258
                  :..|...||.:  |:| ||..:||:|.||::|||:.||::.|..|:.|....:.:||:.
 Frog   202 ------WSKPLAPNDRVEQELF-SGSNTGINFEKYDDIPVEATGNNCPPHIESFQDVTMGEIIMG 259

  Fly   259 NVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED------PHELELG 317
            |:..|.|..|||:||.:||:|...|||||||||||||||||||||||::..|      .|..|.|
 Frog   260 NIQLSRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLKENG 324

  Fly   318 R-------PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 375
            |       |..::::||||||:||:.||||||:.|.::..:||||.....|...:.||||:::||
 Frog   325 RYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 389

  Fly   376 PGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE--HQTLMFSATFPEE 438
            ||||:|.::|..|..:...::|||||||||||||...:|||:...||.|:  .||:|||||||:|
 Frog   390 PGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKE 454

  Fly   439 IQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG----TIVFVETK 499
            ||.:|.:||..|:|:|:|.||....::.|.:..|.:..|||.|:::|:  |.|    |:||||||
 Frog   455 IQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLN--ATGKDSLTLVFVETK 517

  Fly   500 RGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINY 564
            :|||.|..||..:.:..|||||||.|..||:||..|::|...:|:||:||:|||||.|:|||||:
 Frog   518 KGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINF 582

  Fly   565 DMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL--------- 620
            |:||.|::|||||||||||||.|.|||||: ||:..|..||:.:|..:.|.||.:|         
 Frog   583 DLPSDIEEYVHRIGRTGRVGNLGLATSFFN-EKNINITKDLLDLLVEAKQEVPSWLENMAYEQHH 646

  Fly   621 --------------------------------------RTCGAGGDGGYSNQNFGGV---DVRGR 644
                                                  |:.|.||..|:.. .:||.   |..| 
 Frog   647 KSSTRGRSKSRFSGGFGARDYRQSSGASSGFGGSSRGGRSSGHGGSRGFGG-GYGGFYNSDGYG- 709

  Fly   645 GNYVGDA 651
            |||.|.:
 Frog   710 GNYGGSS 716

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 112/221 (51%)
DEXDc 260..467 CDD:214692 112/221 (51%)
Helicase_C 475..584 CDD:278689 64/112 (57%)
ddx3xXP_012812110.1 PTZ00110 114..663 CDD:240273 254/596 (43%)
DEADc_DDX3 226..476 CDD:350809 125/249 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000634
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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