DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and Gem3

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_001261678.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster


Alignment Length:411 Identity:108/411 - (26%)
Similarity:196/411 - (47%) Gaps:49/411 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 SDV-PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLL 301
            ||| |..::.|....|...:::.:.::.:..||.||..:||:..:..||:..:::|:|||..:::
  Fly    17 SDVAPGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVI 81

  Fly   302 PILSKLLEDPHELELGRPQVVIVSPTRELAIQI----FNEARKFAFESYLKIGIVYGGTSF---- 358
            .::...  :|:   :.:|..:||.||||||||:    |:..:.|   ...|.....|||..    
  Fly    82 AVVQSF--NPN---INQPHAMIVVPTRELAIQVQDTFFHLCKSF---RDFKCSAFIGGTDVAKDR 138

  Fly   359 RHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV--T 421
            :..||     ..|:|.||||||...:.........|.:||||||::..   ::.::..::.:  .
  Fly   139 KRMNE-----SRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQ---TKSLQHTVSKLIEA 195

  Fly   422 MRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV---NKYAKRSKL-I 482
            |....|.:..|||:.:.:.....:.:...:.::..........::|.:||:   |...:..:| :
  Fly   196 MPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKL 260

  Fly   483 EILS--------EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS 539
            :||.        |||   |:|..::..||...::|:........|.|...||:|......::|.:
  Fly   261 QILGQIFNQLPYEQA---IIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFT 322

  Fly   540 MKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAAD 604
            |::|:||.:.:||:|..:...|||.|.|.....|:|||||.||.|:.|.|.:|...:|:.....:
  Fly   323 MRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFRE 387

  Fly   605 LVK-------ILEGSGQTVPD 618
            :.|       :||...:.:|:
  Fly   388 MSKKIATAWSVLEFPKEPMPN 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 54/216 (25%)
DEXDc 260..467 CDD:214692 52/216 (24%)
Helicase_C 475..584 CDD:278689 37/117 (32%)
Gem3NP_001261678.1 SrmB 24..541 CDD:223587 104/404 (26%)
P-loop_NTPase 27..228 CDD:304359 54/216 (25%)
Helicase_C 259..367 CDD:278689 36/110 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451600
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47958
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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