DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and CG10333

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_609888.2 Gene:CG10333 / 35112 FlyBaseID:FBgn0032690 Length:822 Species:Drosophila melanogaster


Alignment Length:592 Identity:196/592 - (33%)
Similarity:287/592 - (48%) Gaps:141/592 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 DREERGGER-RG-RLDREERGGER-----------------GERGDGGFARRRR----------- 180
            ||.||||.| || |:||.|||.::                 .||..|...::||           
  Fly   213 DRRERGGGRDRGDRIDRGERGDDKRAEDLTHKDKEKELEAIRERYLGIIKKKRRVRRLNDRKFVF 277

  Fly   181 ----NEDDINNNNNIVEDVERKREFYIPPEPSNDAIEIFSSGIASGI------------------ 223
                .||...:.||:.:  ||..            ::.|..|..:||                  
  Fly   278 DWDAGEDTSIDYNNLYK--ERHH------------VQFFGRGNVAGIDIKEQKRTQSKFYGDLLE 328

  Fly   224 ------------------------------HFSKYNN--------------IPVKVTGSDVPQPI 244
                                          |:|:..|              ..|.:.|..:|.||
  Fly   329 KRRTEAEKEQEKVRLKKMKRKEDKQKWDDRHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPI 393

  Fly   245 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKL-- 307
            :.:..:.....|||.::|.|||.|||||:.:||:....||::..|:||||||.|||:|:||.:  
  Fly   394 RSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 458

  Fly   308 ---LEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 369
               :|...:::.| |..:|::||||||.||..|..||.....::..:|.||.|...|...:..||
  Fly   459 LPKIERLEDVDQG-PYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGC 522

  Fly   370 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV---TMRPE------ 425
            .:||||||||:|.::..::......::||||||||:||||..|:::|:.::   .::|:      
  Fly   523 EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAED 587

  Fly   426 --------------HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYA 476
                          .||:||:||.|..::|:|..:|:....|.||.||......:|.:|.:.:..
  Fly   588 ETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGEND 652

  Fly   477 KRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 540
            ||.||:||||.:.| ..|:||..|:|||.||..|.:..:.:.::||.:.|.|||.||...|:|:.
  Fly   653 KRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAK 717

  Fly   541 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 605
            .:|:||.||.||:|||::..||||||...|:||.||||||||.|..|.|.||...: |.|:..||
  Fly   718 DILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKD-DSALFYDL 781

  Fly   606 VKILEGS 612
            .:.:..|
  Fly   782 KQCVSAS 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 85/234 (36%)
DEXDc 260..467 CDD:214692 87/234 (37%)
Helicase_C 475..584 CDD:278689 56/109 (51%)
CG10333NP_609888.2 DEADc 396..629 CDD:238167 85/233 (36%)
DEXDc 409..632 CDD:214692 83/223 (37%)
Helicase_C 651..761 CDD:278689 56/109 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451612
Domainoid 1 1.000 102 1.000 Domainoid score I343
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9750
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47958
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.940

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