DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vas and CG5800

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster


Alignment Length:522 Identity:144/522 - (27%)
Similarity:221/522 - (42%) Gaps:110/522 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 GQGGSRGGQGGFRGGEGGFRGRLYENEDGDERRGRLDREERGGERRGRLDREERGGERGERGDGG 174
            |:.|||     |:.|.|.|:|                   .||.|:.              ||..
  Fly    10 GKPGSR-----FKPGSGTFKG-------------------AGGGRKS--------------GDNS 36

  Fly   175 FARRRR--NEDDINNNNNIVEDVERKREFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTG 237
            ..|.|:  |:..:......::|::.|            ..||.::.|.....|            
  Fly    37 QKRPRQEINKSRLAATEAEIQDLKTK------------YAEIDATAIKKFAQF------------ 77

  Fly   238 SDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLP 302
                 |:...|...|.:        |.:..||.:|:.||.....|:|::..|.||||||.|||:|
  Fly    78 -----PLSKKTQKALAE--------SKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIP 129

  Fly   303 ILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR 367
            :|..|..:......| ...:|:|||||||.|||...:|.........|::.||.:.:.:...:.:
  Fly   130 VLEHLFMNKWSRTDG-VGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQ 193

  Fly   368 GCHVVIATPGRLLDFVDRTFITFEDT-RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMF 431
             |:::|.||||||..:|...:....| ..:|||||||.|||||.:.:..|:.:  ..|..|||:|
  Fly   194 -CNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIEN--FPPVRQTLLF 255

  Fly   432 SATFPEEIQRMAGEFLKNYVFVAIGIVGGA------CSDVKQT----IYEVNKYAKRSKLIEILS 486
            |||....:|.:|...||:.|:|.   .|||      .:..|:|    :..|.:..::|.::..|.
  Fly   256 SATQTNTVQDLARLNLKDPVYVG---YGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLE 317

  Fly   487 EQ------------ADGTIVFVETKRGADFLASFLSEKE--FPTTSIHGDRLQSQREQALRDFKN 537
            ::            ....||||.:.:.|.:|.....:..  .|..:::|...|.:|.....||..
  Fly   318 DKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLR 382

  Fly   538 GSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDP-EKDRAI 601
            .|..|:.:|.|||||||...:..|:..|.|..:..|:||.||:.|....|.......| |::..|
  Fly   383 KSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMI 447

  Fly   602 AA 603
            :|
  Fly   448 SA 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 75/207 (36%)
DEXDc 260..467 CDD:214692 77/213 (36%)
Helicase_C 475..584 CDD:278689 33/122 (27%)
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 144/522 (28%)
DEADc 74..277 CDD:238167 77/231 (33%)
HELICc 311..437 CDD:238034 33/125 (26%)
DUF4217 474..530 CDD:290667
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451432
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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