DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and ddx5

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_997777.2 Gene:ddx5 / 322206 ZFINID:ZDB-GENE-030131-925 Length:617 Species:Danio rerio


Alignment Length:557 Identity:199/557 - (35%)
Similarity:288/557 - (51%) Gaps:74/557 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 DERRGRLDR-------EERGGERRGRLDREERGGERGERGDGGFARRRRNEDDINN-NNNIVE-- 193
            |..||| ||       ...||.|.|. ...::.|..|:|    ..::..|.|::.. ..|..:  
Zfish     6 DRDRGR-DRGSYSSGPPRFGGSRNGP-PPAKKFGNPGDR----LRKKHWNLDELPKFEKNFYQEN 64

  Fly   194 -DVERKREFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIII 257
             ||.|:         |...:|          |:.:...|.||  |.|.|:||..|..|:....::
Zfish    65 PDVARR---------SAQEVE----------HYRRSKEITVK--GRDGPKPIVKFHEANFPKYVM 108

  Fly   258 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELG-RPQV 321
            |.:.|..:..|||||....||..||:|::..||||||||.::|||.:..:...|. ||.| .|..
Zfish   109 DVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPF-LEHGDGPIC 172

  Fly   322 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 386
            ::::||||||.|:...|.::...|.:|...:|||.....|...:.||..:.|||||||:||::..
Zfish   173 LVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAG 237

  Fly   387 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYV 451
            ........::|||||||||||||...:|:|:..:  ||:.||||:|||:|:|::::|.:|||.|:
Zfish   238 KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI--RPDRQTLMWSATWPKEVRQLAEDFLKEYI 300

  Fly   452 FVAIGIVG-GACSDVKQTIYEVNKYAKRSKLI----EILSEQADGTIVFVETKRGADFLASFLSE 511
            .:.:|.:. .|..::.|.:...|...|..|||    ||:||:.:.||:||||||..|.|...:..
Zfish   301 QINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRR 365

  Fly   512 KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHR 576
            ..:|...||||:.|.:|:..|.:||.|...:||||.|||||||::::|.|||:|.|:..:||:||
Zfish   366 DGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHR 430

  Fly   577 IGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTV-PDFLRTC---------GAGGD--- 628
            ||||.|....|.|.:||.|...:. |.|||.:|..:.|.: |..::..         |.||.   
Zfish   431 IGRTARSQKTGTAYTFFTPNNMKQ-AHDLVSVLREANQAINPKLIQMAEDRGGRSRGGRGGGYRD 494

  Fly   629 -------------GGYSNQNFGGVDVRGRGNYVGDAT 652
                         |.||..|..|.|..|:....|:.|
Zfish   495 DRRDRHSGSRRDFGSYSQDNRSGGDSYGQKKVFGNKT 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 86/207 (42%)
DEXDc 260..467 CDD:214692 85/208 (41%)
Helicase_C 475..584 CDD:278689 55/112 (49%)
ddx5NP_997777.2 PRK01297 25..446 CDD:234938 170/449 (38%)
DEADc 98..303 CDD:238167 86/207 (42%)
HELICc 314..446 CDD:238034 59/131 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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