DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and Ddx24

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_001152974.1 Gene:Ddx24 / 27225 MGIID:1351337 Length:903 Species:Mus musculus


Alignment Length:652 Identity:137/652 - (21%)
Similarity:231/652 - (35%) Gaps:207/652 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 RLYENEDGDERRGRL---DREERGGE-----RRGRLDREERGGERGERGDGGFARRRRNEDDINN 187
            ||:.:|:..:|:.:.   :.||..|:     ::.:| :::|...|...|...     :||.::..
Mouse   110 RLFSSEETKKRKAQAVSEEEEEEEGQSSSPKKKIKL-KKQRDAARAAEGAAA-----QNEYEVKA 168

  Fly   188 NNNIVEDVERKREFYIPPEPSNDAIEIF--------SSGIASGIHFSKYNNIPVKV-----TGSD 239
            :.               ||...:.....        |..:|......|.|....|:     |...
Mouse   169 SE---------------PEAQGEVTACSDQKVGGAKSESLAQAAPRKKKNKGKKKLDTFQSTSPK 218

  Fly   240 VPQPIQ-------HFTSADL---RDIIIDN-----VNKSGYKIPTPIQKCSI-PVISSGRDLMAC 288
            :|:..:       |...||:   ||:.:..     ::..|:..|||||..:: |.|....|::..
Mouse   219 LPKKSKKTWMAEVHDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGA 283

  Fly   289 AQTGSGKTAAFLLPILSKLLE---------------DPHELELG--------------------- 317
            |:||||||.||.:|::..:|:               .|.|:..|                     
Mouse   284 AETGSGKTLAFAIPMIHSVLQWHKMKAPPIPRSTGMPPREMRFGATAHLGSPCKDRTESGVLPEE 348

  Fly   318 ----------------------------------------------------------------- 317
                                                                             
Mouse   349 ARIETEAQPSDSGVQATPETSASASAQTLLVCDDDAGEGPSSLEEKPVPKQNEDGEEKFDAEQAG 413

  Fly   318 ------------------RPQV-VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE 363
                              ||.: ::::||||||||:.......|..:.:...|:.||.|.:.|..
Mouse   414 KLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQR 478

  Fly   364 CITRGCHVVIATPGRLLDFVDRT---FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVT---M 422
            .:.|...:||||||||.:.|...   .......|.:|:||||||::.|...::.:::..:.   .
Mouse   479 MLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQY 543

  Fly   423 RPEHQTLMFSATF------------PEEIQRMAGEFLKNYVFVAIGIVG-----------GACSD 464
            .|..|||:||||.            .:.:::|......:.:...:|:.|           |....
Mouse   544 NPSRQTLVFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVET 608

  Fly   465 VKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 529
            :.:|........|...|...|.:....::||..:......|:..|...:....::|....|.||.
Mouse   609 LTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRL 673

  Fly   530 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD 594
            :.|..|......||:||.||:|||||..::|||:|.:|...:.|:||.|||.|..:.|.:.....
Mouse   674 RNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIG 738

  Fly   595 PE 596
            ||
Mouse   739 PE 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 71/353 (20%)
DEXDc 260..467 CDD:214692 70/356 (20%)
Helicase_C 475..584 CDD:278689 36/108 (33%)
Ddx24NP_001152974.1 SrmB 238..787 CDD:223587 112/503 (22%)
P-loop_NTPase 241..557 CDD:304359 68/315 (22%)
Helicase_C 619..727 CDD:278689 35/107 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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