DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and laf-1

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_001254859.1 Gene:laf-1 / 190611 WormBaseID:WBGene00002244 Length:708 Species:Caenorhabditis elegans


Alignment Length:681 Identity:295/681 - (43%)
Similarity:396/681 - (58%) Gaps:90/681 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 EAEGDGVGGSG----GEGGGY-----QGGNRDVFGRIGGG----RGG-GAGGY-RGGNRDGGGFH 83
            |:.....||||    ..||.|     :||:.........|    ||| |.||| |||...|||..
 Worm     2 ESNQSNNGGSGNAALNRGGRYVPPHLRGGDGGAAAAASAGGDDRRGGAGGGGYRRGGGNSGGGGG 66

  Fly    84 GGRREG------ERDFRGGEGGF--------RGGQGGSRGGQGGSRGGQGGFRGGEGGFRGRLYE 134
            ||...|      :||.|||.||:        ||..||  ||.||:||.... |||.||...|...
 Worm    67 GGYDRGYNDNRDDRDNRGGSGGYGRDRNYEDRGYNGG--GGGGGNRGYNNN-RGGGGGGYNRQDR 128

  Fly   135 NEDGDER--RGRLDREERGGERRG-----RLDREERGGE-RGERGDGGFARRRRNEDDINNNNNI 191
            .:.|...  ||..:..:.|.:.||     ..||.:.||: :..|.:...|...|......|....
 Worm   129 GDGGSSNFSRGGYNNRDEGSDNRGSGRSYNNDRRDNGGDGQNTRWNNLDAPPSRGTSKWENRGAR 193

  Fly   192 VEDVERKREFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDII 256
            .|.:|:               |:| ||..|||:|.||..|||:.||.||||||..|:...|.:.|
 Worm   194 DERIEQ---------------ELF-SGQLSGINFDKYEEIPVEATGDDVPQPISLFSDLSLHEWI 242

  Fly   257 IDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED-PHELEL---- 316
            .:|:..:||..|||:||.|||.:..|||||:|||||||||||||:|:::.:|:| |..:..    
 Worm   243 EENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTS 307

  Fly   317 --GR----PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGG-TSFRHQNECITRGCHVVIA 374
              ||    |..:::||||||::|||||:||||:.:.:...::||| .:::.|...:..|||::||
 Worm   308 SGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIA 372

  Fly   375 TPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIM--THVTMRPEHQTLMFSATFPE 437
            |||||:|.:|:..|..|..|::|||||||||||||...:|:|:  ..:..:.|..|.|||||||:
 Worm   373 TPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPK 437

  Fly   438 EIQRMAGEFLK-NYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG--TIVFVETK 499
            |||.:|.:||| ||||:|:|.||....::.|.|..|.:..|||.|:::|....|.  |:||||||
 Worm   438 EIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETK 502

  Fly   500 RGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINY 564
            |||..||.:|:.:.:...:||||..|.:||:.|..|:.|:..:|:||:||:|||||.|:||||||
 Worm   503 RGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINY 567

  Fly   565 DMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTCGAGGD- 628
            |:||.:|:|||||||||||||.|.|||||: :|:|.||.:|:.::..:.|.:||:|.  |..|| 
 Worm   568 DLPSDVDEYVHRIGRTGRVGNVGLATSFFN-DKNRNIARELMDLIVEANQELPDWLE--GMSGDM 629

  Fly   629 ---GGY-------SNQNFGGVDVR---GRGN 646
               |||       :.|.|||.|.|   |.||
 Worm   630 RSGGGYRGRGGRGNGQRFGGRDHRYQGGSGN 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 108/221 (49%)
DEXDc 260..467 CDD:214692 108/221 (49%)
Helicase_C 475..584 CDD:278689 60/110 (55%)
laf-1NP_001254859.1 PTZ00424 219..622 CDD:185609 201/403 (50%)
DEADc 233..455 CDD:238167 108/221 (49%)
Helicase_C 476..587 CDD:278689 60/110 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 107 1.000 Domainoid score I4096
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000634
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100461
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

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