DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and Y65B4A.6

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_001370755.1 Gene:Y65B4A.6 / 190485 WormBaseID:WBGene00022029 Length:399 Species:Caenorhabditis elegans


Alignment Length:384 Identity:128/384 - (33%)
Similarity:205/384 - (53%) Gaps:27/384 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTA 297
            |:...|:....|..|....||:.::..:...|::.|:.||:.:||.|...||::|.||:|:||||
 Worm    14 VEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTA 78

  Fly   298 AFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKI--GIVYGGTSFRH 360
            .|.:.:|..|     :.::...|.:|:|||||||:||  :....|...|:.:  ....|||:...
 Worm    79 TFSISVLQSL-----DTQVRETQALILSPTRELAVQI--QKVVLALGDYMNVQCHACIGGTNLGE 136

  Fly   361 QNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE 425
            ....:..|.|||..||||:.|.:.|..:.....:.:||||||.||:.||.|.:..|..:  :.|.
 Worm   137 DIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRY--LPPG 199

  Fly   426 HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYA-KRSKLIEILS--- 486
            .|.::.|||.|.||..|..:|:.:.:.:.:.........:||....|::.. |...||::..   
 Worm   200 AQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLT 264

  Fly   487 -EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVAS 550
             .||   ::|..|:|..|:|...:.|..|..:|:|||..|..|::.:::|:.|:.:|||:|.|.:
 Worm   265 ITQA---VLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWA 326

  Fly   551 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 609
            ||||:..:..|||||:|:..:.|:|||||:||.|..|.|.:|        :..|.|:||
 Worm   327 RGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF--------VKQDDVRIL 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 71/208 (34%)
DEXDc 260..467 CDD:214692 68/208 (33%)
Helicase_C 475..584 CDD:278689 43/113 (38%)
Y65B4A.6NP_001370755.1 PTZ00424 1..399 CDD:185609 128/384 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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