DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vas and mut-14

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_504490.1 Gene:mut-14 / 178952 WormBaseID:WBGene00003507 Length:528 Species:Caenorhabditis elegans


Alignment Length:488 Identity:117/488 - (23%)
Similarity:209/488 - (42%) Gaps:73/488 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 DVERKREFYIPPEPSNDAIEIFSSGIASGI--HFSKYNNIPVKVTGSDVPQPIQHFTSA------ 250
            |.:|.|  |...:.:|....:.|:...|.:  .|.|.|.......|.|:|.  .:.|.|      
 Worm    39 DTQRHR--YEVRDQANQRAVVSSAKAESSMIDKFCKENTRIQTNPGIDLPD--DYGTDAIVANAI 99

  Fly   251 -DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH-- 312
             |.|  |::|:..........:|:.||.||..||.|:..|.||.|||.|||:|.:...|::..  
 Worm   100 GDQR--IVNNLKCVHVTTFNAVQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSN 162

  Fly   313 --ELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRH-------QNECITRG 368
              |.....|.::|::.|..|..|:||..     |..|.:..:......|.       .|...|:|
 Worm   163 CFEYTKPSPSILIMASTSALVDQLFNRC-----ELILGLQCMDNVEPIRDIKIDKLVANHPFTKG 222

  Fly   369 -CHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD-MGFSEDMRRIMTHVTMRPEH----Q 427
             |.:...|.|:|...::...:..::.:.::|||||:|:| ..|..|:..|:..  ::.|:    |
 Worm   223 QCDIAFCTIGKLKATIECGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQ--LKEENLENLQ 285

  Fly   428 TLMFSATFPEEI----------QRMAGE----------FLKNYVFVAIGIVG-GACSDVKQTIYE 471
            :..||||:.:..          .||.||          .:..|:...:..|| |..:|::...:.
 Worm   286 SCFFSATYNKNANGTIALTVLQMRMLGEDDPWSVIICPRMSGYITQRVVRVGRGRPNDIRSHPWV 350

  Fly   472 VNKYAKRSKLIEILSE---QADG----TI-VFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQR 528
            :.....|..:.:.|.|   ..||    || :|.||.:....:...|.:..:....:.....::|:
 Worm   351 IKMGIIRKLIDDDLKETGCSKDGPYNETIAIFCETVQRVTQVTMALRQLGYNFKPVCSMITKNQQ 415

  Fly   529 EQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 593
            ...:.|.:...:..::.|::.:||:|:.::||.|..:|.:..|.|.|||||.||.|..|::|...
 Worm   416 LVTVNDLEFRKIHGVVCTNILARGIDVSSVKHTIIMEMSADFDTYKHRIGRVGRDGCGGKSTVLV 480

  Fly   594 DPEKDRA-----IAADLVKILEGSGQTVPDFLR 621
            :..:.:.     :...|...::.|.:.:|.:::
 Worm   481 EHHQLQGGPASNVIEQLYNFMKESKEDIPQWMQ 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 64/250 (26%)
DEXDc 260..467 CDD:214692 62/244 (25%)
Helicase_C 475..584 CDD:278689 30/116 (26%)
mut-14NP_504490.1 SrmB 101..523 CDD:223587 102/422 (24%)
DEAD 117..297 CDD:278688 53/186 (28%)
Helicase_C 352..471 CDD:278689 30/118 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.