DRSC/TRiP Functional Genomics Resources

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Protein Alignment vas and D1Pas1

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_149068.1 Gene:D1Pas1 / 110957 MGIID:91842 Length:660 Species:Mus musculus


Alignment Length:593 Identity:250/593 - (42%)
Similarity:347/593 - (58%) Gaps:78/593 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 HGGRREGERDFRGGEGGFRGGQG----GSRGGQGGSRGGQGGF--RGGEGGFRGRLYENEDGDER 141
            |...||..:.|...:|. |..:.    .|.|.:..:|.....|  |||.|.              
Mouse    42 HLRNREAAKAFYDKDGS-RWSKDKDAYSSFGSRSDTRAKSSFFSDRGGSGS-------------- 91

  Fly   142 RGRLDREERGGERRGRLDREERGGERGERGDGGFAR-------RRRNEDDINNNNNIVEDVERKR 199
            |||.|       .|||.|.|..|...|..|.|.|.|       .:.:|||               
Mouse    92 RGRFD-------ERGRSDYESVGSRGGRSGFGKFERGGNSRWCDKADEDD--------------- 134

  Fly   200 EFYIPPEPSNDAI--EIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNK 262
              :..|.|.::.:  |:||.| .:||:|.||::|||:.||::.|..|:.|:..::.:||:.|:..
Mouse   135 --WSKPLPPSERLEQELFSGG-NTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIEL 196

  Fly   263 SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED-PHEL--------ELGR 318
            :.|..|||:||.:||:|...|||||||||||||||||||||||::..| |.|.        :.||
Mouse   197 TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGR 261

  Fly   319 ----PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRL 379
                |..::::||||||:||:.|||||::.|.::..:||||.....|...:.||||:::||||||
Mouse   262 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 326

  Fly   380 LDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE--HQTLMFSATFPEEIQRM 442
            :|.::|..|..:..:::|||||||||||||...:|||:...||.|:  ..|:|||||||:|||.:
Mouse   327 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQML 391

  Fly   443 AGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGT--IVFVETKRGADFL 505
            |.:||..|:|:|:|.||....::.|.:..|.:..|||.|:::|:.....:  :||||||:|||.|
Mouse   392 ARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSL 456

  Fly   506 ASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKI 570
            ..||..:.:..|||||||.|..||:||..|::|...:|:||:||:|||||.|:|||||:|:||.|
Mouse   457 EDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 521

  Fly   571 DDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTCG-----AGGDGG 630
            ::|||||||||||||.|.|||||: |::..|..||:.:|..:.|.||.:|....     .||..|
Mouse   522 EEYVHRIGRTGRVGNLGLATSFFN-ERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGGSRG 585

  Fly   631 YSNQNFGG 638
            .|...|.|
Mouse   586 RSKSRFSG 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 109/221 (49%)
DEXDc 260..467 CDD:214692 109/221 (49%)
Helicase_C 475..584 CDD:278689 61/110 (55%)
D1Pas1NP_149068.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..117 26/96 (27%)
Q motif 179..207 8/27 (30%)
DEADc 181..403 CDD:238167 109/221 (49%)
DEXDc 194..417 CDD:214692 109/222 (49%)
DEAD box 346..349 2/2 (100%)
Helicase_C 425..535 CDD:278689 61/109 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 598..632
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000634
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100461
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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