DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vas and ddx27

DIOPT Version :9

Sequence 1:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster
Sequence 2:XP_012808872.2 Gene:ddx27 / 100101759 XenbaseID:XB-GENE-923338 Length:760 Species:Xenopus tropicalis


Alignment Length:551 Identity:163/551 - (29%)
Similarity:263/551 - (47%) Gaps:87/551 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 GRLYENEDGDERR-------------GRLDREERGGERRGRLDREERGGERGERGDGGFA----- 176
            |.:.|.::|.|..             |:..::::.| |.|..:.:...|||..:.|..:.     
 Frog     9 GTIQEEDEGPEEAESDEEEEEQKIVLGKKKKQQQSG-RSGDFNADFVFGERDGQSDDSWVMADVM 72

  Fly   177 -------------------RRRRN-------------EDDINNNNNIVEDVERKREFYIPPEPSN 209
                               |:|:|             |:::.:.....|..|.::|.....|.|.
 Frog    73 KQLKKRVATSLDEKIETVRRKRKNQEKAEKAKLAEKSEEEVKSEEEESEKEEEQKEEEEEEEESE 137

  Fly   210 DAIEIFSSGIASGIHFSKYNNIPVK-----------VTG--SDVPQPIQH--FTSADLRDIIIDN 259
            |.   |||...|.:  :|.:.:.||           .:|  .|..|..::  |...:|...::..
 Frog   138 DE---FSSEEESVL--TKADTLRVKEKKKKRKGAGDSSGFFEDASQYDENLTFQEMNLSRPLLKA 197

  Fly   260 VNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 324
            ::...:..||||||..||:...|:|:.|||.||:||||||:||:|.:|:..|.|..:.|  |:::
 Frog   198 ISAMSFTQPTPIQKACIPIGLLGKDICACAATGTGKTAAFMLPVLERLIYKPREAPVTR--VLVL 260

  Fly   325 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFI 388
            .|||||.||:...:|..|..:.:...:..||...:.|...:..|..|:|||||||:|.:.. ...
 Frog   261 VPTRELGIQVHAVSRLLAQFTEVTTCLAVGGLDVKTQEAALRSGPDVLIATPGRLIDHLHNCPSF 325

  Fly   389 TFEDTRFVVLDEADRMLDMGFSEDMR---RIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNY 450
            :.:....::|||||||||..|.|.|:   |:.:|     :.|||:||||..||::.:|...|:|.
 Frog   326 SLDSIEVLILDEADRMLDEYFEEQMKEIIRLCSH-----QRQTLLFSATMSEEVKDLASVSLRNP 385

  Fly   451 VFVAIGIVGGACSDVKQTIYEV--NKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSE 511
            |.:.:.........::|....:  |:...|..:...|..:.  |..::|.:||:.|..:...|..
 Frog   386 VRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACALLTRTFQDHVMLFTQTKKQAHRMHILLGL 450

  Fly   512 KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHR 576
            .......:||:..|:||.::||.||:..:.:|:||.||:|||||..:|.|||..||..:..||||
 Frog   451 MGLRVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHR 515

  Fly   577 IGRTGRVGNNGRATSFFDPEKDRAIAADLVK 607
            :|||.|.|..||:.|... |::|.:..::||
 Frog   516 VGRTARAGKAGRSVSLVG-EEERKMLKEIVK 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vasNP_001260458.1 DEADc 247..454 CDD:238167 80/210 (38%)
DEXDc 260..467 CDD:214692 78/210 (37%)
Helicase_C 475..584 CDD:278689 41/110 (37%)
ddx27XP_012808872.2 SrmB 184..663 CDD:223587 131/370 (35%)
DEADc_DDX27 194..389 CDD:350705 78/201 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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