DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment solo and DED1

DIOPT Version :9

Sequence 1:NP_001027274.2 Gene:solo / 26067079 FlyBaseID:FBgn0283440 Length:1031 Species:Drosophila melanogaster
Sequence 2:NP_014847.3 Gene:DED1 / 854379 SGDID:S000005730 Length:604 Species:Saccharomyces cerevisiae


Alignment Length:559 Identity:110/559 - (19%)
Similarity:179/559 - (32%) Gaps:176/559 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 GGYRGGNRDGGGFHGGRREGERDFRGGEGGFRGG-QGGSR-GGQGGSRGGQG------------- 119
            |||.|| |.||.|....|.|..    |.|||.|| .|||| .|:.|.|...|             
Yeast    45 GGYNGG-RGGGSFFSNNRRGGY----GNGGFFGGNNGGSRSNGRSGGRWIDGKHVPAPRNEKAEI 104

  Fly   120 ---------GFRGGEGGFRGRLYENED-------AKELP-PIPSSCDKDEVGAFIDQLDLSKYTT 167
                     .|:..     |..::|.|       .|::| ||.........|..::.:.|:::|.
Yeast   105 AIFGVPEDPNFQSS-----GINFDNYDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTK 164

  Fly   168 -------SLALIRKLRDYLLTA------------------FKALVNQAWASLEKLAQEKRAQKAH 207
                   |:.::...||.:..|                  ||...:....|.....|.|....|.
Yeast   165 PTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAV 229

  Fly   208 QIRETTDMMNRLMEDMGRL-----IREGEHEEANGIGMGFQSIDADC---------------RAD 252
            .:..|.::..::.::..:.     ::.......:.||...:.|:..|               |..
Yeast   230 IMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGK 294

  Fly   253 LSQWRNLQQVVMPQSSEIRDGQTNRTSGTEGGRSGGLTD------GDDLTEIQSAAYAVYHQVLD 311
            :| ..|::.:|:.::..:.|      .|.|......:.|      |:..|.:.||.:....|.|.
Yeast   295 IS-LANVKYLVLDEADRMLD------MGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLA 352

  Fly   312 RGYQ------------------TGRRLYDDNQGALREDSIPTEDREHPENNQVDGSTYGVT---- 354
            |.:.                  |.:.||.:||           |::....:.:..||.|:|    
Yeast   353 RDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-----------DKKSALLDLLSASTDGLTLIFV 406

  Fly   355 ---RFLHWLSENFVTRHEIRAVRFGSPHMVFQSYDWPESPKQHISTVHQKGIFYSQPLIRTRIIA 416
               |....|:: |:.....||.....        |..:|.::......:.|.  :..|:.|.:.|
Yeast   407 ETKRMADQLTD-FLIMQNFRATAIHG--------DRTQSERERALAAFRSGA--ATLLVATAVAA 460

  Fly   417 TVASEPNNSSSGQLSSMVNLARHQRSQNQETPDGI--YVSRYNATGDEETPCSATGVPGRVVALR 479
            .....||      ::.::         |.:.|..:  ||.|...||       ..|..|...|..
Yeast   461 RGLDIPN------VTHVI---------NYDLPSDVDDYVHRIGRTG-------RAGNTGLATAFF 503

  Fly   480 ASSTPNEHRSDPGLSFIPNLTYEDGTIPSLAAGGAASTP 518
            .|...|..:   ||..|  ||..:..:||.......|.|
Yeast   504 NSENSNIVK---GLHEI--LTEANQEVPSFLKDAMMSAP 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
soloNP_001027274.2 None
DED1NP_014847.3 DEADc_DDX3_DDX4 144..368 CDD:350725 33/230 (14%)
SF2_C_DEAD 374..503 CDD:350174 33/172 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000634
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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