DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicC and dync1i2a

DIOPT Version :9

Sequence 1:NP_001303578.1 Gene:SdicC / 26067076 FlyBaseID:FBgn0283434 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_017213212.2 Gene:dync1i2a / 767729 ZFINID:ZDB-GENE-060929-1086 Length:626 Species:Danio rerio


Alignment Length:547 Identity:283/547 - (51%)
Similarity:374/547 - (68%) Gaps:71/547 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 YSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNL 77
            :|.|..|   ||.|::..:...:.||||.:.|||:|||.:          ...|.|:|:.     
Zfish   119 HSELGRG---PLKLAMTKMTHVDFPPKEVVSYTKETQTPT----------MTEQKDEEDE----- 165

  Fly    78 GNGFTSKLPPGYLTHGLPTVKDVAPAITP-LEIKKETEVKKEV-----NELSEEQKQMIILSENF 136
                                ::..||..| .|.:||...:|:|     :||:||:|..|:.||.|
Zfish   166 --------------------EEETPAAQPEAETEKEKPEEKQVEEALPHELTEEEKLQILHSEEF 210

  Fly   137 QRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDW 201
            ..|...:.|::||||||:||::.||.|....|:..:.::..:|||||.|.|:||||.|.:|.:||
Zfish   211 MDFFDHSTRIVERALSEHVDVFFDYSGRDMEEKEGEMQAGTKLSLNRKFVDDRWSKQRVVTCLDW 275

  Fly   202 STHFPKLVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGT 266
            |..:|:|:|.||:||||:|:|||||.:|||.|:||:|||.||||||||||..||||:|||::|||
Zfish   276 SPQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKATPEYVFHCQSAVMSAAFAKFHPNLVVGGT 340

  Fly   267 YSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQ 331
            |||||||||||..:|||:||||||||||||||||:.:||||||||:||||:|||:||||||||||
Zfish   341 YSGQIVLWDNRSNRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKMCSWSLDMLSQ 405

  Fly   332 PQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGI 396
            |||::||..:|||::|:|||:||..::|:.|:|||||.||:|||||.|:|::|::|.|.||||||
Zfish   406 PQDSMELVFKQSKSVAVTSMSFPLGDVNNFVVGSEDGSVYTASRHGSRAGISEMFEGHHGPITGI 470

  Fly   397 STHYNQLSPDFGHLFLTSS----IKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDYMMDVAW 457
            ..|......||.|||||:|    :|:||.|               :|||||||||||||:.||.|
Zfish   471 HCHTAAGPVDFSHLFLTASFDWTVKLWSNK---------------NNKPLYSFEDNSDYVYDVMW 520

  Fly   458 SPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVY 522
            |||||||||.|||.||:||||||.||||||||:.|.|:|||||:.|:.||..:.:||..|::::|
Zfish   521 SPVHPALFACVDGLGRVDLWNLNNDTEVPTASVAVDGSPALNRLRWSQSGREIAVGDSEGQIHIY 585

  Fly   523 DVAENLAQPSRDE--------IKMNQS 541
            ||.|.:|.|..||        :::|::
Zfish   586 DVGEQIAVPRNDEWTRFVRTLVEINEN 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicCNP_001303578.1 Dynein_IC2 23..51 CDD:288403 12/27 (44%)
NtpH 108..>178 CDD:225368 28/74 (38%)
WD40 196..523 CDD:295369 212/330 (64%)
WD40 repeat 196..245 CDD:293791 30/48 (63%)
WD40 <224..534 CDD:225201 202/313 (65%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 31/38 (82%)
WD40 repeat 349..386 CDD:293791 22/36 (61%)
WD40 repeat 393..446 CDD:293791 23/56 (41%)
WD40 repeat 452..491 CDD:293791 31/38 (82%)
WD40 repeat 498..522 CDD:293791 9/23 (39%)
dync1i2aXP_017213212.2 Dynein_IC2 126..154 CDD:402922 12/27 (44%)
WD40 269..586 CDD:421866 212/331 (64%)
WD40 repeat 270..317 CDD:293791 28/46 (61%)
WD40 repeat 324..363 CDD:293791 29/38 (76%)
WD40 repeat 372..415 CDD:293791 33/42 (79%)
WD40 repeat 423..461 CDD:293791 22/37 (59%)
WD40 repeat 470..509 CDD:293791 20/53 (38%)
WD40 repeat 515..542 CDD:293791 20/26 (77%)
WD40 repeat 561..587 CDD:293791 10/25 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573337
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.910

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