DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicC and sw

DIOPT Version :9

Sequence 1:NP_001303578.1 Gene:SdicC / 26067076 FlyBaseID:FBgn0283434 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster


Alignment Length:586 Identity:505/586 - (86%)
Similarity:512/586 - (87%) Gaps:65/586 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAF---------- 63
            |::|.:..|||||||||||||||||||||||||||||||||||||||||||||:.          
  Fly    93 LQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYME 157

  Fly    64 --------------------------DAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAP 102
                                      |...|||||||||||||||||||||||||||||||||||
  Fly   158 DWWRPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAP 222

  Fly   103 AITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDS 167
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   223 AITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDS 287

  Fly   168 EEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPKLVVGSYHNNEESPNEPDGVVMVWNT 232
            |||||||||||||||||||||||||||||||||||||||:|||||||||||||||||||||||||
  Fly   288 EEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNT 352

  Fly   233 KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHP 297
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   353 KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHP 417

  Fly   298 VYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLV 362
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   418 VYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLV 482

  Fly   363 MGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSS----IKIWSLKL 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||:|||| 
  Fly   483 MGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLK- 546

  Fly   424 PISSCQFSVVSGINSNKPLYSFEDNSDYMMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTA 488
                          ..||||||||||||:||||||||||||||||||||||||||||||||||||
  Fly   547 --------------DTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTA 597

  Fly   489 SIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRD----------EIKMNQSDE 543
            ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||
  Fly   598 SIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDE 662

  Fly   544 V 544
            |
  Fly   663 V 663

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicCNP_001303578.1 Dynein_IC2 23..51 CDD:288403 27/27 (100%)
NtpH 108..>178 CDD:225368 69/69 (100%)
WD40 196..523 CDD:295369 306/330 (93%)
WD40 repeat 196..245 CDD:293791 47/48 (98%)
WD40 <224..534 CDD:225201 290/313 (93%)
WD40 repeat 251..289 CDD:293791 37/37 (100%)
WD40 repeat 298..337 CDD:293791 38/38 (100%)
WD40 repeat 349..386 CDD:293791 36/36 (100%)
WD40 repeat 393..446 CDD:293791 34/56 (61%)
WD40 repeat 452..491 CDD:293791 37/38 (97%)
WD40 repeat 498..522 CDD:293791 23/23 (100%)
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 27/27 (100%)
WD40 316..632 CDD:421866 306/330 (93%)
WD40 repeat 316..365 CDD:293791 47/48 (98%)
WD40 repeat 371..409 CDD:293791 37/37 (100%)
WD40 repeat 418..457 CDD:293791 38/38 (100%)
WD40 repeat 469..555 CDD:293791 78/100 (78%)
WD40 repeat 561..599 CDD:293791 36/37 (97%)
WD40 repeat 607..633 CDD:293791 25/25 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439694
Domainoid 1 1.000 50 1.000 Domainoid score I18819
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - P PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
1110.910

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