DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicC and Dync1i1

DIOPT Version :9

Sequence 1:NP_001303578.1 Gene:SdicC / 26067076 FlyBaseID:FBgn0283434 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_006505045.1 Gene:Dync1i1 / 13426 MGIID:107743 Length:645 Species:Mus musculus


Alignment Length:536 Identity:277/536 - (51%)
Similarity:356/536 - (66%) Gaps:68/536 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPPGYL 90
            |.|..|...:..|:|.:.|:|:|||.         ||.....:|||..                 
Mouse   148 LGVSKVTQVDFLPREVVSYSKETQTP---------LATHQSEEDEEDE----------------- 186

  Fly    91 THGLPTVKDVAPAI---TPLEIKKETEVKKEV--NELSEEQKQMIILSENFQRFVVRAGRVIERA 150
                   :.|.|.|   :.||.:::.:..||.  .||:||:||.|:.||.|..|..|..||||||
Mouse   187 -------EMVEPKIGHDSELENQEKKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERA 244

  Fly   151 LSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPKLVVGSYHN 215
            |:|:.||:.||.|....|:..|.::.|.||.||.||||.|||:|.:|.||||..:|:|:|.||.|
Mouse   245 LAEDSDIFFDYSGRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSN 309

  Fly   216 NEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQK 280
            ||::|:|||||.:|||.||||:|||.||||||:|||.|||:|:|||::||||||||||||||..:
Mouse   310 NEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHR 374

  Fly   281 RTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKA 345
            |||:||||||||||||||||:.:||||||||:|::|:|||:|||||||||.||:::||...:||.
Mouse   375 RTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYNKSKP 439

  Fly   346 IAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHL 410
            :|:|.||||..::|:.|:|||:|.||:|.|||.::|:.||:|.|.||:|||:.|......||.||
Mouse   440 VAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFSHL 504

  Fly   411 FLTSS----IKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDYMMDVAWSPVHPALFAAVDGS 471
            |:|||    :|:|:.|               .||||||||||:||:.||.||||||||||.|||.
Mouse   505 FVTSSFDWTVKLWTTK---------------HNKPLYSFEDNADYVYDVMWSPVHPALFACVDGM 554

  Fly   472 GRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRD-- 534
            |||||||||.||||||||:.:.||.|||||.|...|..|.:||..|::::|||.| ||.|..|  
Mouse   555 GRLDLWNLNSDTEVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGE-LAVPHNDEW 618

  Fly   535 --------EIKMNQSD 542
                    ||:.|::|
Mouse   619 TRFARTLVEIRANRAD 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicCNP_001303578.1 Dynein_IC2 23..51 CDD:288403 9/24 (38%)
NtpH 108..>178 CDD:225368 30/71 (42%)
WD40 196..523 CDD:295369 203/330 (62%)
WD40 repeat 196..245 CDD:293791 31/48 (65%)
WD40 <224..534 CDD:225201 194/313 (62%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 27/38 (71%)
WD40 repeat 349..386 CDD:293791 19/36 (53%)
WD40 repeat 393..446 CDD:293791 21/56 (38%)
WD40 repeat 452..491 CDD:293791 32/38 (84%)
WD40 repeat 498..522 CDD:293791 10/23 (43%)
Dync1i1XP_006505045.1 Dynein_IC2 147..173 CDD:371592 9/24 (38%)
WD40 283..606 CDD:392136 207/337 (61%)
WD40 repeat 291..337 CDD:293791 29/45 (64%)
WD40 repeat 346..385 CDD:293791 29/38 (76%)
WD40 repeat 393..434 CDD:293791 28/40 (70%)
WD40 repeat 442..481 CDD:293791 20/38 (53%)
WD40 repeat 488..529 CDD:293791 21/55 (38%)
WD40 repeat 535..573 CDD:293791 31/37 (84%)
WD40 repeat 581..607 CDD:293791 11/25 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830608
Domainoid 1 1.000 379 1.000 Domainoid score I846
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 638 1.000 Inparanoid score I823
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm8761
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.910

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