DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicB and dync2i2

DIOPT Version :9

Sequence 1:NP_001303577.1 Gene:SdicB / 26067075 FlyBaseID:FBgn0283433 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001099160.1 Gene:dync2i2 / 794361 ZFINID:ZDB-GENE-070928-9 Length:501 Species:Danio rerio


Alignment Length:465 Identity:114/465 - (24%)
Similarity:202/465 - (43%) Gaps:60/465 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 ETEVK-KEVNE----LSEEQKQMIILSENFQ------RFVVRAGRVIERALSENVDIYTDYIGGG 165
            |||.: |:|:|    ..::..|.:.|..:..      .|:.||..|:.|.|.:|...:     ..
Zfish    38 ETETQAKDVSENGTQTQDQSGQTLSLDRDLTDFPGLLDFMRRAEDVVIRELVKNSKSH-----AF 97

  Fly   166 DSEEANDERSHARLS-LNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMV 229
            |..|.|.|..:..:| :.|:.:.:...|:..:||:.|:.....:..|....::...:.....|..
Zfish    98 DGFEVNWEEQNESVSCMYRLQHVDAQEKSLQVTSVSWNCTGSVIACGFGRVDDGDWSNEKACVCT 162

  Fly   230 WNT---KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 291
            ||.   ......|:.:....:.||..||....|:::.||.|||::|:||....:...:.:|.:||
Zfish   163 WNVDRQNLNPKRPDVIIDVATPVMCLCFHPVRPSVVAGGLYSGEVVVWDTSRSQDLILAQTGMSA 227

  Fly   292 AAHTHPVYCLQMV--GTQNAHNVISISSDGKLCSWSLD------MLS---------QPQDTLELQ 339
            ..|..|||.:..|  ..:...:|:|..|.|::..|::|      :||         .||.....:
Zfish   228 DTHREPVYQINWVPGARRGEFSVLSAGSGGRVLLWTIDGSEAKLLLSSGYALVRQQMPQSGAASK 292

  Fly   340 QRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHG--------------LRSGVNEVYERHL 390
            .|.|..|.:|::|....::::.::|||.|.|...|...              ||:.:...:....
Zfish   293 TRGSLTIGVTAVALSPWDLDTFLVGSEGGLVLKCSFSSETAAAVPSDGESVILRAPMQFSFSPRG 357

  Fly   391 GPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFA 455
            |||.  |.|:   ||...:||::...|....|.|:....||.:...:..||..|.|||..|.:||
Zfish   358 GPIH--SVHF---SPFHRNLFVSVGTDGLAHLHSVLQPCPLLALRVSDSYVFGVRWSPTRPLVFA 417

  Fly   456 AVDGSGRLDLWNLNQDTEVPIASI--VVAGAPALNRVSWTPSGLH-VCIGDEAGKLYVYDVAENL 517
            ||.|.|.:.:::|.:.:..|:|:|  ...|.||. .:.:.|...: :.:|:..|.:.::.::..|
Zfish   418 AVTGQGLVQMFDLGRRSLRPVATIDQNAGGQPAY-CLEFNPKHTNLLAVGNADGSVNIWQLSAEL 481

  Fly   518 AQPSRDEIKM 527
            .:....|..|
Zfish   482 TEQGAKETAM 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicBNP_001303577.1 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 19/76 (25%)
WD40 196..512 CDD:295369 89/352 (25%)
WD40 repeat 196..245 CDD:293791 8/51 (16%)
WD40 <224..523 CDD:225201 86/335 (26%)
WD40 repeat 251..289 CDD:293791 12/37 (32%)
WD40 repeat 298..337 CDD:293791 13/55 (24%)
WD40 repeat 349..435 CDD:293791 24/99 (24%)
WD40 repeat 441..479 CDD:293791 15/37 (41%)
WD40 repeat 487..513 CDD:293791 3/26 (12%)
dync2i2NP_001099160.1 WD40 66..481 CDD:225201 103/425 (24%)
WD40 repeat 130..180 CDD:293791 8/49 (16%)
WD40 repeat 187..229 CDD:293791 14/41 (34%)
WD40 repeat 235..296 CDD:293791 13/60 (22%)
WD40 repeat 301..338 CDD:293791 8/36 (22%)
WD40 repeat 361..399 CDD:293791 11/42 (26%)
WD40 repeat 403..442 CDD:293791 15/38 (39%)
WD40 repeat 450..477 CDD:293791 4/27 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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