DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicB and dnai2a

DIOPT Version :10

Sequence 1:NP_001303577.1 Gene:SdicB / 26067075 FlyBaseID:FBgn0283433 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001103935.1 Gene:dnai2a / 563648 ZFINID:ZDB-GENE-070410-46 Length:555 Species:Danio rerio


Alignment Length:453 Identity:120/453 - (26%)
Similarity:205/453 - (45%) Gaps:51/453 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 LTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIE---RAL 151
            ::||:..|:...|         || :....:||:...::.:...|::|:.|:....|:|   :.:
Zfish    66 VSHGMNHVEGGWP---------ET-ISANNDELTLRYRKKVQKDESYQQTVIETVSVMENYKQKV 120

  Fly   152 SENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDW---STHFPELVVG-S 212
            .|...:|..     |:.........|...:..|..|.:..| |..||:.|   ..|  :|.|. |
Zfish   121 LEKSQVYFK-----DNRVVVKREDMASARIINVLRDPKKEK-RAATSLSWHPVDNH--KLAVAYS 177

  Fly   213 YHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNR 277
            ....:..|........:||.:..|. ||......|.::...:...|.::::||:|:|||..||.|
Zfish   178 CVEFQRGPKNMSSDSYIWNIENNKQ-PEMTLKSVSPLVCLEYNLKNISILIGGSYNGQIGFWDTR 241

  Fly   278 VQKRTPIQRTPLSAAAHTH--PVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQ 340
            ...: |:|   :||..|:|  |||.:..:.|:......|.|:||::..|.:..:|:|...|.|..
Zfish   242 SGSQ-PVQ---ISANEHSHKDPVYKVIWLQTKIGTEAFSASTDGQVLFWDIRNMSEPTKQLILDP 302

  Fly   341 RQSK----AIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEV---YERHLGPITGIST 398
            .:||    |....||.|. |.:...::|:|.|.|...:|. |.:....:   |..||||:..:  
Zfish   303 AKSKNLNNAFGAFSMEFD-NTMPKFLVGTEQGLVVLCNRK-LETTDEPIVCTYSGHLGPVYAV-- 363

  Fly   399 HYNQLSPDFGHLFLTSSIDWTIKLWSLKDTK--PLYSFEDNSDYVMDVAWSPVHPALFAAVDGSG 461
               |.:|.|...|||.: |||.::|| :|.:  .:.|.:.::.::||..||||.||:|..|...|
Zfish   364 ---QRNPFFPKYFLTVA-DWTARIWS-EDIRLSSIMSTKYHTSHLMDGCWSPVRPAVFFTVKMDG 423

  Fly   462 RLDLWNLNQDTEVPIASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDE 524
            .||:|::....:.|:.|:.|......:......|.| :|.|.:.|.:.:..::.||.....:|
Zfish   424 TLDVWDILLKQKDPVLSLKVCDETLYSIRVKNDSPL-MCCGSQLGTVTLLKMSPNLCTLQSNE 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicBNP_001303577.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 96/330 (29%)
WD40 repeat 196..245 CDD:293791 13/52 (25%)
WD40 repeat 251..289 CDD:293791 12/37 (32%)
WD40 repeat 298..337 CDD:293791 10/38 (26%)
WD40 repeat 349..435 CDD:293791 28/90 (31%)
WD40 repeat 441..479 CDD:293791 15/37 (41%)
WD40 repeat 487..513 CDD:293791 5/25 (20%)
dnai2aNP_001103935.1 WD40 repeat 160..208 CDD:293791 13/50 (26%)
WD40 <189..469 CDD:475233 88/294 (30%)
WD40 repeat 213..253 CDD:293791 14/43 (33%)
WD40 repeat 261..299 CDD:293791 9/37 (24%)
WD40 repeat 314..354 CDD:293791 10/41 (24%)
WD40 repeat 360..396 CDD:293791 12/42 (29%)
WD40 repeat 403..428 CDD:293791 13/24 (54%)
WD40 repeat 448..482 CDD:293791 7/34 (21%)
Blue background indicates that the domain is not in the aligned region.

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