DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SdicB and CG9313

DIOPT Version :10

Sequence 1:NP_001303577.1 Gene:SdicB / 26067075 FlyBaseID:FBgn0283433 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001286657.1 Gene:CG9313 / 37374 FlyBaseID:FBgn0034566 Length:740 Species:Drosophila melanogaster


Alignment Length:550 Identity:117/550 - (21%)
Similarity:217/550 - (39%) Gaps:103/550 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 GGGNGDVLAFDAQGDDEE---------SSLQNLGNGF------------------TSKLPP---- 87
            |.|.|:.....|:.:|:|         |..:.|.|.|                  |..:||    
  Fly   188 GEGEGEGEGAAARQEDDEPAHQAAAVSSKKRKLINQFNYCERGALTYTNPKRNVDTQTIPPPRSQ 252

  Fly    88 ------------GYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFV 140
                        .|:.:...:.||        ..||| |.|:...|.....|..|  :|...:..
  Fly   253 FGANVLQWVIYDSYMENFAESQKD--------GTKKE-ERKRGKREKKFRDKSAI--AEQLNKKY 306

  Fly   141 VRAGRVIERALSENV--DIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWST 203
            ::..:::||.:::|:  ||..||....|..:...|.....|.|.:..||:  :|...:|.:.::.
  Fly   307 LKCWQILERMINQNIYDDIAHDYRYWEDPADEFREGEGNLLPLWKFQYDK--TKKMNVTDILFNP 369

  Fly   204 HFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYS 268
            .:.:|....:.:::......:|.:.::..| ..|.|:.:......||........|.|.:.|.|.
  Fly   370 SYYDLFAVCFGSHDFMKQTNEGYLCLFTVK-NPSFPDYIIQTDCGVMCCDIHPTYPFLAVIGLYD 433

  Fly   269 GQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMV--GTQNAH---NVISISSDGKLCSWSL-- 326
            |.:.:::.|...:.|:.   :|...:.....|:..:  |...|.   |..|:||||::.:|.|  
  Fly   434 GNVAVYNLREDCKEPLY---VSRGVNCKHGECVWQIKWGLDMADGEVNFFSVSSDGRVFNWILMQ 495

  Fly   327 ---------------DMLSQPQDT-LELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASR 375
                           .::..|..| :.|:...|      .|.|...:....::|:|.||:|..|.
  Fly   496 NKLWVTTIITLYRENGLVDGPDGTKVTLKSGGS------CMVFHPVDNKIFLVGTECGYIYKCST 554

  Fly   376 HGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDY 440
             ...|.....|..|...:..|.  :|:.:   .::|::...||.:|:|......||:.| |....
  Fly   555 -AFSSKYLMTYYAHNMSVYRID--FNRFN---SNIFVSCGADWMVKVWEDMRPDPLFIF-DLGAA 612

  Fly   441 VMDVAWSPVHPALFAAVDGSGRLDLW--NLNQDTEVPIASIVVAGAPALNRVSWTPSGLHVCIGD 503
            |.||.|:|....:||||...|::.::  |:|:...:.|.::|......|.|:|:......:.:||
  Fly   613 VGDVKWAPYSSTVFAAVTTEGKVHVFDLNVNKYKAICIQAVVPKRKNKLTRLSFNEKLAFIVVGD 677

  Fly   504 EAGKLYVYDVAENL---AQPSRDEIKMNQS 530
            |.|......::.||   .:|.:.::.::|:
  Fly   678 EKGVTTSLKLSPNLRMMVKPPKKQLYLDQN 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicBNP_001303577.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 74/340 (22%)
WD40 repeat 196..245 CDD:293791 6/48 (13%)
WD40 repeat 251..289 CDD:293791 7/37 (19%)
WD40 repeat 298..337 CDD:293791 13/61 (21%)
WD40 repeat 349..435 CDD:293791 20/85 (24%)
WD40 repeat 441..479 CDD:293791 13/39 (33%)
WD40 repeat 487..513 CDD:293791 7/25 (28%)
CG9313NP_001286657.1 WD40 repeat 362..412 CDD:293791 6/50 (12%)
WD40 413..640 CDD:475233 57/242 (24%)
WD40 repeat 415..454 CDD:293791 9/41 (22%)
WD40 repeat 463..505 CDD:293791 10/41 (24%)
WD40 repeat 513..557 CDD:293791 12/50 (24%)
WD40 repeat 571..608 CDD:293791 10/42 (24%)
WD40 repeat 613..654 CDD:293791 13/40 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.