DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicB and Dnai4

DIOPT Version :10

Sequence 1:NP_001303577.1 Gene:SdicB / 26067075 FlyBaseID:FBgn0283433 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001019957.1 Gene:Dnai4 / 313417 RGDID:1311027 Length:803 Species:Rattus norvegicus


Alignment Length:512 Identity:118/512 - (23%)
Similarity:208/512 - (40%) Gaps:104/512 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 YLTHGLPTVKDVAPAITPLEIKK----ETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIER 149
            ||:.....|:|..|.|...|...    |:.:..:.:|..|:..:.|:.|:...:.:.    .:||
  Rat   300 YLSKASLLVRDRDPKIQDSESSSLMDIESVILAKSHEDEEDNSEKILKSDKLHQDLF----YMER 360

  Fly   150 ALSENV-----------DIYTDYIGGGDSE---------------------------EANDERSH 176
            .|.|||           .||.:...|...|                           |...|:|.
  Rat   361 VLMENVFQPKLAAYRQLPIYKELEPGQPEEDLQVVNKVTEDEVKKDEEEEMETELEIEITTEQST 425

  Fly   177 ARLSLNRVFYDERWS------KNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFK 235
            ...:|.|:     ||      |...::|:.|:....:|:...| .|.....:..|:...|:.| .
  Rat   426 IPANLERL-----WSFSCDLTKGLNVSSLSWNKANSDLLAVGY-GNFGFKEQKRGMACCWSIK-N 483

  Fly   236 KSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYC 300
            ...||.::.....|.|..|:..:|||:..|.::|.:.:::.:....||:..:..|...|..||:.
  Rat   484 PMWPERIYQSPYGVTSVDFSISSPNLLAVGYHNGTVAIYNVQSNHNTPVLDSSESPQKHLGPVWQ 548

  Fly   301 LQMV-------GTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ-----------QRQSKAIA 347
            :|.:       |......::|||:||::..|.:.......|.:.|:           :::.|..|
  Rat   549 VQWIEQDRGTTGDDRREILVSISADGRISKWVIRKGLDCHDLMHLKRTTVTSSKKGIEKEKKGEA 613

  Fly   348 ITS-------MAFPANEINSLVMGSEDGYVYSASRHGLRSGVN----EVYERHLGPITGISTHYN 401
            :.|       .||...:.|..:.|:|:|.::..|     ...|    |.|..|.||:..::  :|
  Rat   614 LISRQAPGMCFAFHTKDTNIYLAGTEEGLIHKCS-----CSYNEQYLETYRGHKGPVYKVT--WN 671

  Fly   402 QLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLW 466
            ...||   :||:.|.||.:.:|...:.||.::|...:..|.||||||....:|||.: ..|:::|
  Rat   672 PFCPD---VFLSCSADWGVMIWHQDNVKPFFTFYPTTYVVYDVAWSPKSAYIFAAAN-ENRVEIW 732

  Fly   467 NLNQDTEVPIASIVVAGAPAL--NRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPS 521
            :|...|..|:  ||....|.:  ..|.:......:.:||..|::.||:: .|:..|:
  Rat   733 DLQISTLDPL--IVNVANPGIKFTTVLFAKQTDCLLVGDSDGQVAVYEL-RNMPTPT 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicBNP_001303577.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 85/346 (25%)
WD40 repeat 196..245 CDD:293791 10/48 (21%)
WD40 repeat 251..289 CDD:293791 9/37 (24%)
WD40 repeat 298..337 CDD:293791 10/45 (22%)
WD40 repeat 349..435 CDD:293791 25/96 (26%)
WD40 repeat 441..479 CDD:293791 15/37 (41%)
WD40 repeat 487..513 CDD:293791 6/27 (22%)
Dnai4NP_001019957.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..41
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..109
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..163
WD40 repeat 447..492 CDD:293791 10/46 (22%)
WD 1. /evidence=ECO:0000255 492..532 9/39 (23%)
WD40 496..778 CDD:475233 75/294 (26%)
WD40 repeat 497..541 CDD:293791 11/43 (26%)
WD 2. /evidence=ECO:0000255 541..589 11/47 (23%)
WD40 repeat 547..616 CDD:293791 12/68 (18%)
WD 3. /evidence=ECO:0000255 616..656 9/44 (20%)
WD40 repeat 621..659 CDD:293791 9/42 (21%)
WD 4. /evidence=ECO:0000255 660..700 14/44 (32%)
WD40 repeat 666..701 CDD:293791 11/39 (28%)
WD 5. /evidence=ECO:0000255 703..742 14/39 (36%)
WD40 repeat 708..740 CDD:293791 14/32 (44%)
WD 6. /evidence=ECO:0000255 748..787 9/40 (23%)
WD40 repeat 750..779 CDD:293791 6/28 (21%)
Blue background indicates that the domain is not in the aligned region.

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