DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicB and Dync2i2

DIOPT Version :10

Sequence 1:NP_001303577.1 Gene:SdicB / 26067075 FlyBaseID:FBgn0283433 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001005542.2 Gene:Dync2i2 / 296618 RGDID:1359465 Length:537 Species:Rattus norvegicus


Alignment Length:520 Identity:127/520 - (24%)
Similarity:215/520 - (41%) Gaps:68/520 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 GGGNGDVLAFDAQGDDEESSLQNLGNGFTSKL-----PPGYLTHGLPTVKDVAPAITPLEIKKET 113
            |.|.|:.....|...||...:.::.:.:.|..     |....|.|:.|.:..|.|.|..:.:.:|
  Rat    25 GAGGGERRGRPAPLQDETLGVASVPSQWRSVQGIRGEPKSCQTAGIATAEASAQARTHADAQVQT 89

  Fly   114 EVKKEVNELSE-EQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEAN-DERSH 176
            |..:|...::. .|...:.|:    .|:.|...::.|.|:.|...:     ..|..|.| .|:..
  Rat    90 EAPEEPAAVAPVSQYDTLRLA----AFLRRVEAMVVRELNNNWQSH-----AFDGYEVNWTEQQQ 145

  Fly   177 ARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTK---FKKST 238
            ....|:.:.|.....:...:|.:.|:|....|.......::.........|..||..   .....
  Rat   146 TVSCLHTLGYPPAQGQGLHVTGISWNTTGSVLACAYGRLDDGDWGTLKSYVCTWNLDRQGLNPHQ 210

  Fly   239 PEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVY-CLQ 302
            |..|....||||...|....|:.|.||.|||::::||....:...:.||.|:...||.||| .|.
  Rat   211 PSVVVEVPSAVMCLAFHPIQPSHIAGGLYSGEVLVWDMSRPEDPLLWRTGLTDDTHTDPVYQVLW 275

  Fly   303 MVGTQNAH--NVISISSDGKLCSW--------------SLDMLSQPQDT-LELQQRQSKAIAITS 350
            :...:::|  .|:|.::||::..|              :|.:...|:.| |:...|....:.:||
  Rat   276 LPEPRHSHRFQVLSAATDGRVLLWRGSGAGQLRLSKGFALAVQQLPRSTKLKKPPRGETEVGVTS 340

  Fly   351 MAFPANEINSLVMGSEDGYVYSASRHG-------------LRSGVNEVYERHLGPITGISTHYNQ 402
            :||.:.:.:..|:|:|.|:....|...             ||:.|...:..|.||:..:|     
  Rat   341 VAFSSFDSSLFVLGTEGGFPLKCSLAAEAAALTRMPSSVPLRAPVQFTFSPHGGPVYSVS----- 400

  Fly   403 LSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWN 467
            .||...:|||::..|..:.|:|:...:||.|.:.:..|:..|.||||.|.:|||..|.|.:.|::
  Rat   401 CSPFHRNLFLSAGTDGHVHLYSMLQAQPLTSLQLSHKYLFAVRWSPVRPLVFAAASGEGDVQLFD 465

  Fly   468 LNQDTEVPIASIVVA--GAPALNRVSWTPSGLHVCIGDEAGKLYVYDV-----------AENLAQ 519
            |.:.::.|..||...  |:|.......:.....:..||..|.:.|:.:           ||:|.|
  Rat   466 LQKSSQKPTVSITQTQDGSPVYCLEFNSQQTQLLAAGDAKGVVKVWQLSTAFTEQGPREAEDLDQ 530

  Fly   520  519
              Rat   531  530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicBNP_001303577.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 93/351 (26%)
WD40 repeat 196..245 CDD:293791 9/51 (18%)
WD40 repeat 251..289 CDD:293791 12/37 (32%)
WD40 repeat 298..337 CDD:293791 12/56 (21%)
WD40 repeat 349..435 CDD:293791 27/98 (28%)
WD40 repeat 441..479 CDD:293791 14/37 (38%)
WD40 repeat 487..513 CDD:293791 4/25 (16%)
Dync2i2NP_001005542.2 WD40 50..515 CDD:441893 117/478 (24%)
WD40 repeat 165..211 CDD:293791 7/45 (16%)
WD40 repeat 223..265 CDD:293791 13/41 (32%)
WD40 repeat 271..309 CDD:293791 8/37 (22%)
WD40 repeat 339..389 CDD:293791 12/49 (24%)
WD40 repeat 396..433 CDD:293791 12/41 (29%)
WD40 repeat 439..479 CDD:293791 16/39 (41%)
WD40 repeat 486..511 CDD:293791 3/24 (13%)
Blue background indicates that the domain is not in the aligned region.

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