DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicB and dync2i1

DIOPT Version :10

Sequence 1:NP_001303577.1 Gene:SdicB / 26067075 FlyBaseID:FBgn0283433 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_073764942.1 Gene:dync2i1 / 100330581 ZFINID:ZDB-GENE-140821-1 Length:1065 Species:Danio rerio


Alignment Length:619 Identity:122/619 - (19%)
Similarity:213/619 - (34%) Gaps:205/619 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 THGLPTVKDVAPAITPLEIKKETEVKKEV----NELSEEQKQMIILS------------------ 133
            |.|  |:.|...|       |:.|:.::|    .:.|||..::|.|.                  
Zfish   449 TRG--TIIDFVSA-------KQREISQKVARKQKKRSEELLRLIDLDFSITFSMLDLPPVNEYDM 504

  Fly   134 --ENF------QRFVV----RAGRVIERALSENVDIYTDY-------IGGGDSEEANDERSHARL 179
              :||      |.:|.    ...|.|:....|..|.:|.:       .||....:||...|.||.
Zfish   505 YIKNFGTANTKQAYVQCNEDSTDRDIQTEDVEMTDKWTQHPPEAKSACGGSTGTQANAVESIART 569

  Fly   180 SLN---------------RVFYDERWSKNRCITSM--------------DWSTHFPEL------- 208
            |.:               .|..:|..:::..:..:              ..:|..|.|       
Zfish   570 STDSKRLTTFLRSAAQVMAVLVEENMAQSNSVKKLCSKTDALSFSDGCIQLNTKLPFLNGRQVSL 634

  Fly   209 ---------VVGSYH----NNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPN 260
                     .:.|.|    .|.....:.:.||.|||. ::.|.|:.:...:|.|...||:.....
Zfish   635 LQFSQVQRQTLLSVHPPSSKNSSVRLDSETVVCVWNI-WEPSRPQKILLYESEVKCCCFSPGKVT 698

  Fly   261 LILGGTYSGQIVLWDNR----------VQKRTPIQRTP-------LSAAAHTHPVYCLQ-MVGTQ 307
            |:..||..|.:::||.|          :.|.....|.|       ||...|..||..:: ::.:.
Zfish   699 LVFAGTAVGSVIVWDLREHSGSHSNLEIGKEVWTLRYPTFSTDAVLSGVGHLSPVVSIEPVIASA 763

  Fly   308 NAHNVISISSD-----------------GKLCSWSLDMLSQPQDT--------LELQQRQSKAIA 347
            :..:..::::|                 |.|..|.:..|.:..|:        |:| ...|.|::
Zfish   764 DMSSTSTLTADIEECMGLSFQLGSLDENGVLTLWVVIELPKGNDSGSQTDLVPLDL-HHASNAVS 827

  Fly   348 I---------------------------TSMAF-PA---------NEINSLVMGSEDGYVYSASR 375
            |                           |.|.| |:         ::.|...:|:..|.|...:|
Zfish   828 ILLGLRPGGKVKLLHSSSLQTTERLPKDTIMGFGPSVSLQLKFLPSDSNHYFIGTNMGLVRHGTR 892

  Fly   376 HGLRSGVNEVYERH---LGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDN 437
            |.|:. :.:||...   ..|:...:..::.|...|   ||....|.:::|.|:....||..:...
Zfish   893 HSLKV-LPKVYRSQSDSYRPVEVTALDFSPLGEPF---FLIGCSDGSVRLHSVLREDPLMEWAGR 953

  Fly   438 SD--YVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVP----------IASIVVAGAPALNRV 490
            |.  .::.|.||...||:|..:|.:..|.:|:|.:...||          :.::.|.|.||... 
Zfish   954 SSGAPILSVQWSQTRPAVFCVLDAASDLHIWDLTEKDYVPVITENIHSDRVTAMAVFGEPAKQN- 1017

  Fly   491 SWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDE 524
              |.||  :.:..::||:.:....::|...|..:
Zfish  1018 --TFSG--IALAKQSGKVEIQYFKKSLTVSSASD 1047

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicBNP_001303577.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 88/444 (20%)
WD40 repeat 196..245 CDD:293791 13/82 (16%)
WD40 repeat 251..289 CDD:293791 12/54 (22%)
WD40 repeat 298..337 CDD:293791 7/64 (11%)
WD40 repeat 349..435 CDD:293791 23/98 (23%)
WD40 repeat 441..479 CDD:293791 12/47 (26%)
WD40 repeat 487..513 CDD:293791 5/25 (20%)
dync2i1XP_073764942.1 None
Blue background indicates that the domain is not in the aligned region.

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