DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicA and dync1i2b

DIOPT Version :9

Sequence 1:NP_001303576.1 Gene:SdicA / 26067074 FlyBaseID:FBgn0283432 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_009300385.1 Gene:dync1i2b / 561612 ZFINID:ZDB-GENE-090121-1 Length:645 Species:Danio rerio


Alignment Length:525 Identity:284/525 - (54%)
Similarity:363/525 - (69%) Gaps:51/525 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PLNLSVYNVQATNIPPKETLVYTKQTQT-TSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLP 86
            ||.|.:..|...:.||||.:.|:|:||| |.|           ...:|||..             
Zfish   145 PLKLGMSKVTQVDFPPKEMVSYSKETQTPTQT-----------HHKEDEEEE------------- 185

  Fly    87 PGYLTHGLPTVKDVA---PAITPLEIKKETEVKKEV--NELSEEQKQMIILSENFQRFVVRAGRV 146
                       :|:|   |.:.|.|.|...:.:.|.  :||:||:||.|:.||.|..|...:.|:
Zfish   186 -----------EDLAVMQPVMEPQEEKDSQKEEDEASPHELTEEEKQQILHSEEFVTFFDHSSRI 239

  Fly   147 IERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVG 211
            :||||||.||::.||.|....::..:.::.|:|||||.|.||||||:|.:|.:|||..:|||:|.
Zfish   240 MERALSEQVDVFFDYSGRDLQDKEGESQAGAKLSLNRQFADERWSKHRVVTCLDWSPQYPELLVA 304

  Fly   212 SYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDN 276
            ||.:|||:|:|||||.:|||.|:||:|||.||||||||||..||:|:|||::|||||||||||||
Zfish   305 SYCSNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSAAFAQFHPNLVVGGTYSGQIVLWDN 369

  Fly   277 RVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQR 341
            |..||||:|||||||:||||||||:.:||||||||:||||:|||:|||||||||.|||:|||..:
Zfish   370 RSNKRTPVQRTPLSASAHTHPVYCVNVVGTQNAHNLISISTDGKMCSWSLDMLSTPQDSLELVFK 434

  Fly   342 QSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPD 406
            |||::|:|||:||..::|:.|:|||||.||:|.|||.::|::|::|.|.|||||:..|......|
Zfish   435 QSKSVAVTSMSFPLGDVNNFVVGSEDGSVYTACRHGSKAGISEMFEGHHGPITGLDCHTAAGPVD 499

  Fly   407 FGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQD 471
            |.|||:|||.|||:||||.|:.|||||||||||||.||.|||.||||||.|||.|.|||||||.:
Zfish   500 FSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGHLDLWNLNNE 564

  Fly   472 TEVPIASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRD----------EIK 526
            ||||.||:.|.|.||||||.|..||..|.:||..|:|::|||.|.::.|.:|          ||.
Zfish   565 TEVPTASVTVEGNPALNRVRWAHSGREVAVGDSEGQLHIYDVGEQISVPRQDEWTRFVRTLTEIN 629

  Fly   527 MNQSD 531
            .|:.|
Zfish   630 ENRED 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicANP_001303576.1 Dynein_IC2 23..51 CDD:288403 13/28 (46%)
NtpH 108..>178 CDD:225368 26/71 (37%)
WD40 196..512 CDD:295369 212/315 (67%)
WD40 repeat 196..245 CDD:293791 30/48 (63%)
WD40 <224..523 CDD:225201 201/298 (67%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 30/38 (79%)
WD40 repeat 349..435 CDD:293791 49/85 (58%)
WD40 repeat 441..479 CDD:293791 28/37 (76%)
WD40 repeat 487..513 CDD:293791 13/25 (52%)
dync1i2bXP_009300385.1 Dynein_IC2 145..173 CDD:288403 12/27 (44%)
Spore_coat_CotO 153..>256 CDD:290858 44/137 (32%)
WD40 283..605 CDD:295369 216/321 (67%)
WD40 repeat 289..338 CDD:293791 30/48 (63%)
WD40 repeat 343..382 CDD:293791 29/38 (76%)
WD40 362..>606 CDD:225201 164/243 (67%)
WD40 repeat 391..434 CDD:293791 33/42 (79%)
WD40 repeat 442..490 CDD:293791 27/47 (57%)
WD40 repeat 497..528 CDD:293791 21/30 (70%)
WD40 repeat 534..575 CDD:293791 29/40 (73%)
WD40 repeat 580..606 CDD:293791 13/25 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573342
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
OMA 1 1.010 - - QHG54336
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.900

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