DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicA and CG13930

DIOPT Version :10

Sequence 1:NP_001303576.1 Gene:SdicA / 26067074 FlyBaseID:FBgn0283432 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_647645.1 Gene:CG13930 / 38210 FlyBaseID:FBgn0035256 Length:685 Species:Drosophila melanogaster


Alignment Length:352 Identity:81/352 - (23%)
Similarity:147/352 - (41%) Gaps:52/352 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 GSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWD 275
            |.|.:.:.|.....|.|.|||.| ....||..:|.|..|::..|:...|.|:..|.::|.:.:.|
  Fly   313 GVYSHGKVSKLPRSGWVYVWNIK-NPVNPERRYHYQVPVVTVEFSPTQPQLLAIGLHNGGVEVRD 376

  Fly   276 NRVQKRTPIQRTPLSAAAHTHPVYCLQM------VGTQNAH--NVISISSDGKLCSWSL----DM 328
            ...|...|:..:...::.:..||..::.      ||.:|.|  ..::.|..|.:..:.|    :|
  Fly   377 ISGQDLPPLAVSQRLSSPYFEPVTAIKWIYFEGDVGCRNPHITPFLATSQAGAVTKYRLINSPNM 441

  Fly   329 LSQPQDTL-----ELQ----QRQSKAIAITSMAFPANEINSLVMG----------SEDGYVYSAS 374
            |...|..|     ||:    :||..|.::.:...|  :...:|:.          :::|.:|..|
  Fly   442 LGLEQQRLQRAEGELEGIPIERQPPAASLLANRHP--QCLEIVLDPVQSDIYYVLTDEGTLYKCS 504

  Fly   375 -----RHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSF 434
                 :|      .|:.:.|.||...:     :.||....::||...||.|::|......|:.:.
  Fly   505 TNYPLQH------LELRQVHDGPAACM-----EFSPWSPRMYLTCGSDWCIRIWLAGILLPIVTL 558

  Fly   435 EDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPIASIVVAGAPALNRVSWTPSGLHV 499
            :.:...|....||..|..:..::..| .:|:|:|...|..|::|.|:..........:|..|..:
  Fly   559 QHHLSPVHCARWSRTHSTILVSLSRS-TVDIWDLRNSTMKPVSSTVIDADIFYTTFKFTHCGRSL 622

  Fly   500 CIGDEAGKLYVYDVAENLAQPSRDEIK 526
            .:|:|||.|.:... |::..|...:.|
  Fly   623 AVGNEAGNLLMLSF-EDMPFPPHFQYK 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicANP_001303576.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 78/336 (23%)
WD40 repeat 196..245 CDD:293791 11/33 (33%)
WD40 repeat 251..289 CDD:293791 8/37 (22%)
WD40 repeat 298..337 CDD:293791 12/55 (22%)
WD40 repeat 349..435 CDD:293791 19/100 (19%)
WD40 repeat 441..479 CDD:293791 10/37 (27%)
WD40 repeat 487..513 CDD:293791 7/25 (28%)
CG13930NP_647645.1 WD40 repeat 295..344 CDD:293791 11/31 (35%)
WD40 repeat 350..397 CDD:293791 9/46 (20%)
WD40 repeat 400..473 CDD:293791 16/72 (22%)
WD40 442..>629 CDD:441893 43/200 (22%)
WD40 repeat 478..513 CDD:293791 5/40 (13%)
WD40 <518..>593 CDD:475233 20/80 (25%)
WD40 repeat 524..560 CDD:293791 9/40 (23%)
Blue background indicates that the domain is not in the aligned region.

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